RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DAZ1Q9NQZ3 744 aaKnown RBP5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 SMCPP49901 116 aaPredicted RBP5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 KLF5Q13887 457 aaPredicted RBP5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 Q8N1Y9 231 aa5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 FAM19A4Q96LR4 140 aa5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 TCL1BO95988 128 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 MIC13Q5XKP0 118 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 C2orf82Q6UX34 121 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 WFDC9Q8NEX5 89 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 METTL26Q96S19 204 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 TRAV9-1A0A075B6T8 112 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 PRM2P04554 102 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 ATP6V0E2Q8NHE4 81 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 ZNRF2Q8NHG8 242 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 XCL2Q9UBD3 114 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 V9GYV3 84 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 TRBV7-1A0A0A6YYK4 115 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 DEFB114Q30KQ6 69 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 C17orf77Q96MU5 243 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 MDFICQ9P1T7 246 aa5.88□□□□□ -1.47
LIMCH1-219ENST00000514096 PYYP10082 97 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 NPC2P61916 151 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 IFI27L1Q96BM0 104 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 ANAPC10Q9UM13 185 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 TMEM243Q9BU79 118 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 HBBP68871 147 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 SS18Q15532 418 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 RNF182Q8N6D2 247 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 UBE2WQ96B02 151 aa5.87□□□□□ -1.47
LIMCH1-219ENST00000514096 I3L2K1 104 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 ERCC8Q13216 396 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 ORMDL2Q53FV1 153 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 PEX7O00628 323 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 HIST1H4AP62805 103 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 DGAT2L7PQ6IED9 249 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 TEPPQ6URK8 271 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 C11orf45Q8TAV5 145 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 CHCHD1Q96BP2 118 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 IGKV1-17P01599 117 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 HLA-DMBP28068 263 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 IFI27P40305 119 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 GDF5OSQ5U4N7 250 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 LINC01545Q5VT33 79 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 LINC00526Q96FQ7 95 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 PRO0461Q9UI25 63 aa5.86□□□□□ -1.47
LIMCH1-219ENST00000514096 IGKV2D-26A0A0A0MRZ7 120 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 MYMXA0A1B0GTQ4 84 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 IGLV1-51P01701 117 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 M0R2P5 195 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 COX7CP15954 63 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 MORN5Q5VZ52 161 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 MORN3Q6PF18 240 aaPredicted RBP5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 C9orf85Q96MD7 179 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 MGST2Q99735 147 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 C15orf62A8K5M9 175 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 C19orf54Q5BKX5 351 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 SOSTDC1Q6X4U4 206 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 TMEM190Q8WZ59 177 aa5.85□□□□□ -1.47
LIMCH1-219ENST00000514096 F8W735 103 aaPredicted RBP5.84□□□□□ -1.47
LIMCH1-219ENST00000514096 ZNF22P17026 224 aaPredicted RBP5.84□□□□□ -1.47
LIMCH1-219ENST00000514096 RPS28P62857 69 aaKnown RBP5.84□□□□□ -1.47
LIMCH1-219ENST00000514096 TMEM14EPQ6UXP3 125 aa5.84□□□□□ -1.47
LIMCH1-219ENST00000514096 NPCDR1Q9BY65 106 aa5.84□□□□□ -1.47
LIMCH1-219ENST00000514096 TRAV12-2A0A075B6T6 113 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 IGKV1OR2-108A0A075B7D4 117 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 IGKV3D-7A0A0C4DH55 119 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 IGHV7-4-1A0A0J9YVY3 117 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 OSTCQ9NRP0 149 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 U3KQK5 164 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 H3BUA1 57 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 COX7A2P2O60397 106 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 SH2D1AO60880 128 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 NPYP01303 97 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 DAD1P61803 113 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 CSMD3Q7Z407 3707 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 MRPS12O15235 138 aaKnown RBP5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 PRSS2P07478 247 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 TMEM258P61165 79 aa5.83□□□□□ -1.48
LIMCH1-219ENST00000514096 NDUFA4O00483 81 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 TIMM17BO60830 172 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 GPHB5Q86YW7 130 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 M0R3E3 92 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 C8orf88P0DMB2 117 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 CRIP2P52943 208 aaPredicted RBP5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 SNRPD3P62318 126 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 C20orf197Q8N268 126 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 AGPAT4-IT1Q9H0P7 198 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 TRAV8-3A0A0A6YYJ7 113 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 RBMY1BA6NDE4 496 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 RBMY1EA6NEQ0 496 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 PAX4O43316 350 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 RBMY1DP0C7P1 496 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 ODF3L2Q3SX64 289 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 Q5XG85 94 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 Q6Q795 121 aa5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 C11orf68Q9H3H3 251 aaKnown RBP5.82□□□□□ -1.48
LIMCH1-219ENST00000514096 ZNF503Q96F45 646 aa5.81□□□□□ -1.48
LIMCH1-219ENST00000514096 ODF3Q96PU9 254 aa5.81□□□□□ -1.48
LIMCH1-219ENST00000514096 ZNF815PA8K554 130 aa5.81□□□□□ -1.48
LIMCH1-219ENST00000514096 PMS2P5A8MQ11 134 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms