RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TNFRSF18Q9Y5U5 241 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 IGLV2-18A0A075B6J9 118 aa11.81□□□□□ -0.52
VIM-205ENST00000485947 SDHAF1A6NFY7 115 aa11.81□□□□□ -0.52
VIM-205ENST00000485947 NUDT3O95989 172 aa11.81□□□□□ -0.52
VIM-205ENST00000485947 HOXA5P20719 270 aa11.81□□□□□ -0.52
VIM-205ENST00000485947 IFI27P40305 119 aaPredicted RBP11.81□□□□□ -0.52
VIM-205ENST00000485947 LINC00310P59036 64 aa11.81□□□□□ -0.52
VIM-205ENST00000485947 URB1-AS1Q96HZ7 61 aa11.81□□□□□ -0.52
VIM-205ENST00000485947 HHLA3Q9XRX5 114 aa11.81□□□□□ -0.52
VIM-205ENST00000485947 TRBV27A0A0K0K1C4 114 aa11.8□□□□□ -0.52
VIM-205ENST00000485947 LINC01546A6NGU7 62 aa11.8□□□□□ -0.52
VIM-205ENST00000485947 VCYO14598 125 aa11.8□□□□□ -0.52
VIM-205ENST00000485947 TCAPO15273 167 aa11.8□□□□□ -0.52
VIM-205ENST00000485947 CRYBA4P53673 196 aa11.8□□□□□ -0.52
VIM-205ENST00000485947 SNRPEP62304 92 aaKnown RBP11.8□□□□□ -0.52
VIM-205ENST00000485947 RNASEKQ6P5S7 137 aaKnown RBP11.8□□□□□ -0.52
VIM-205ENST00000485947 AP5S1Q9NUS5 200 aa11.8□□□□□ -0.52
VIM-205ENST00000485947 TRBV7-3A0A075B6L6 115 aa11.79□□□□□ -0.52
VIM-205ENST00000485947 HSBP1O75506 76 aa11.79□□□□□ -0.52
VIM-205ENST00000485947 TRAV26-1A0A087WT03 109 aa11.78□□□□□ -0.52
VIM-205ENST00000485947 M0R2N4 97 aa11.78□□□□□ -0.52
VIM-205ENST00000485947 KIR2DL4Q99706 377 aa11.78□□□□□ -0.52
VIM-205ENST00000485947 I3L3M4 83 aa11.77□□□□□ -0.53
VIM-205ENST00000485947 RTL8CO15255 209 aa11.77□□□□□ -0.53
VIM-205ENST00000485947 HIST3H2BBQ8N257 126 aa11.77□□□□□ -0.53
VIM-205ENST00000485947 ZNRF2Q8NHG8 242 aa11.77□□□□□ -0.53
VIM-205ENST00000485947 PRSS29PA6NIE9 313 aa11.76□□□□□ -0.53
VIM-205ENST00000485947 PAX4O43316 350 aa11.76□□□□□ -0.53
VIM-205ENST00000485947 NUPR1O60356 82 aa11.76□□□□□ -0.53
VIM-205ENST00000485947 UBE2D3P61077 147 aa11.76□□□□□ -0.53
VIM-205ENST00000485947 UBE2D2P62837 147 aa11.76□□□□□ -0.53
VIM-205ENST00000485947 ORMDL2Q53FV1 153 aa11.76□□□□□ -0.53
VIM-205ENST00000485947 C1orf134Q5TEV5 83 aa11.76□□□□□ -0.53
VIM-205ENST00000485947 DAZ4Q86SG3 579 aaKnown RBP11.76□□□□□ -0.53
VIM-205ENST00000485947 DAZ3Q9NR90 486 aaKnown RBP11.76□□□□□ -0.53
VIM-205ENST00000485947 GAGE12JA6NER3 117 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 LINC00694P0DN24 101 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 BTF3P20290 206 aaKnown RBP11.75□□□□□ -0.53
VIM-205ENST00000485947 S100A2P29034 98 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 GAGE1Q13065 139 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 GAGE4Q13068 117 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 GAGE5Q13069 117 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 LAGE3Q14657 143 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 GAGE13Q4V321 117 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 PACRGQ96M98 296 aaPredicted RBP11.75□□□□□ -0.53
VIM-205ENST00000485947 UPK3BQ9BT76 320 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 Q9UF83 564 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 LINC00588Q9Y4M8 146 aa11.75□□□□□ -0.53
VIM-205ENST00000485947 NBDYA0A0U1RRE5 68 aa11.74□□□□□ -0.53
VIM-205ENST00000485947 A0A1B0GVY2 172 aa11.74□□□□□ -0.53
VIM-205ENST00000485947 G0S2P27469 103 aa11.74□□□□□ -0.53
VIM-205ENST00000485947 AMTP48728 403 aa11.74□□□□□ -0.53
VIM-205ENST00000485947 TMEM18Q96B42 140 aa11.74□□□□□ -0.53
VIM-205ENST00000485947 IGHV1-24A0A0C4DH33 117 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 LOC100131303A0A0U1RQF7 123 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 LINC01549A6NIU2 74 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 GYPEP15421 78 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 FCER1GP30273 86 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 COTL1Q14019 142 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 PDZD11Q5EBL8 140 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 TTC32Q5I0X7 151 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 NEGR1Q7Z3B1 354 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 ABCA13Q86UQ4 5058 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 VSIG2Q96IQ7 327 aa11.73□□□□□ -0.53
VIM-205ENST00000485947 HBDP02042 147 aa11.72□□□□□ -0.53
VIM-205ENST00000485947 TMEM97Q5BJF2 176 aa11.72□□□□□ -0.53
VIM-205ENST00000485947 SH2D6Q7Z4S9 175 aa11.72□□□□□ -0.53
VIM-205ENST00000485947 Q9H8V8 135 aa11.72□□□□□ -0.53
VIM-205ENST00000485947 A0A0J9YY99 117 aa11.71□□□□□ -0.53
VIM-205ENST00000485947 TSHBP01222 138 aa11.71□□□□□ -0.53
VIM-205ENST00000485947 FAM19A2Q8N3H0 131 aa11.71□□□□□ -0.53
VIM-205ENST00000485947 MRPS16Q9Y3D3 137 aaKnown RBP11.71□□□□□ -0.53
VIM-205ENST00000485947 ICOSQ9Y6W8 199 aa11.71□□□□□ -0.53
VIM-205ENST00000485947 PKHD1P08F94 4074 aa11.71□□□□□ -0.54
VIM-205ENST00000485947 MRPL23Q16540 153 aaKnown RBP11.7□□□□□ -0.54
VIM-205ENST00000485947 ATP6V0E2Q8NHE4 81 aa11.7□□□□□ -0.54
VIM-205ENST00000485947 HIST1H2BLQ99880 126 aa11.7□□□□□ -0.54
VIM-205ENST00000485947 GTSF1LQ9H1H1 148 aa11.7□□□□□ -0.54
VIM-205ENST00000485947 A0A096LNJ9 63 aa11.69□□□□□ -0.54
VIM-205ENST00000485947 ESRGQ1W209 222 aa11.69□□□□□ -0.54
VIM-205ENST00000485947 C6orf223Q8N319 242 aa11.69□□□□□ -0.54
VIM-205ENST00000485947 A0A096LPF7 62 aa11.68□□□□□ -0.54
VIM-205ENST00000485947 IGHV3-38A0A0C4DH36 116 aa11.68□□□□□ -0.54
VIM-205ENST00000485947 IFITM10A6NMD0 228 aa11.68□□□□□ -0.54
VIM-205ENST00000485947 FABP4P15090 132 aa11.68□□□□□ -0.54
VIM-205ENST00000485947 PMCHL1Q16048 86 aa11.68□□□□□ -0.54
VIM-205ENST00000485947 LEPROTL1O95214 131 aa11.67□□□□□ -0.54
VIM-205ENST00000485947 TOMM6Q96B49 74 aa11.67□□□□□ -0.54
VIM-205ENST00000485947 CYSLTR1Q9Y271 337 aa11.67□□□□□ -0.54
VIM-205ENST00000485947 C2orf66Q6UXQ4 117 aa11.66□□□□□ -0.54
VIM-205ENST00000485947 C20orf203Q8NBC4 194 aa11.66□□□□□ -0.54
VIM-205ENST00000485947 HSPB8Q9UJY1 196 aa11.66□□□□□ -0.54
VIM-205ENST00000485947 LOC105371267A0A1B0GV96 52 aa11.65□□□□□ -0.54
VIM-205ENST00000485947 CHCHD7Q9BUK0 85 aa11.65□□□□□ -0.54
VIM-205ENST00000485947 TRBV25-1A0A075B6N4 114 aa11.64□□□□□ -0.55
VIM-205ENST00000485947 K7EP13 123 aa11.64□□□□□ -0.55
VIM-205ENST00000485947 NTM-AS1Q6ZSK4 140 aa11.64□□□□□ -0.55
VIM-205ENST00000485947 KRTAP3-3Q9BYR6 98 aa11.64□□□□□ -0.55
VIM-205ENST00000485947 KRTAP3-2Q9BYR7 98 aa11.64□□□□□ -0.55
VIM-205ENST00000485947 TRBV6-8A0A0A6YYG3 113 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms