RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 BOD1L1Q8NFC6 3051 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 COL6A6A6NMZ7 2263 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 TRAV23DV6A0A075B6W5 121 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 CTSGP08311 255 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 C1orf195Q5TG92 126 aa3.15□□□□□ -1.91
VPS50-210ENST00000471188 RBMY1BA6NDE4 496 aaKnown RBP3.14□□□□□ -1.91
VPS50-210ENST00000471188 RBMY1EA6NEQ0 496 aaKnown RBP3.14□□□□□ -1.91
VPS50-210ENST00000471188 COX7A2LO14548 114 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 BUB3O43684 328 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 RBMY1DP0C7P1 496 aaKnown RBP3.14□□□□□ -1.91
VPS50-210ENST00000471188 RBMY1A1P0DJD3 496 aaKnown RBP3.14□□□□□ -1.91
VPS50-210ENST00000471188 RBMY1CP0DJD4 496 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 RBMY1FQ15415 496 aaKnown RBP3.14□□□□□ -1.91
VPS50-210ENST00000471188 ATP1A1-AS1Q5TC04 95 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 KRTAP4-2Q9BYR5 136 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 NCOR1O75376 2440 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 MUC4Q99102 2169 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 IGLV11-55A0A075B6I3 123 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 IGLV3-9A0A075B6K5 115 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 FAM223BA6NKX1 122 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 POLR2KP53803 58 aaKnown RBP3.14□□□□□ -1.91
VPS50-210ENST00000471188 ECSCRQ19T08 205 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 CLEC19AQ6UXS0 136 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 VMO1Q7Z5L0 202 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 PRIMA1Q86XR5 153 aa3.14□□□□□ -1.91
VPS50-210ENST00000471188 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.14□□□□□ -1.912e-6■■■■□ 23.8
VPS50-210ENST00000471188 ZDBF2Q9HCK1 2354 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 A0A0J9YX75 114 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 PATE3B3GLJ2 98 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 FAM27E3Q08E93 113 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 C15orf32Q32M92 178 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 TMEM105Q8N8V8 129 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 WFDC9Q8NEX5 89 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 C9orf85Q96MD7 179 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 LITAFQ99732 161 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 DKK4Q9UBT3 224 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 CREBBPQ92793 2442 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 KMT2BQ9UMN6 2715 aaPredicted RBP3.13□□□□□ -1.91
VPS50-210ENST00000471188 IGHV1-58A0A0C4DH39 117 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 CLPSL1A2RUU4 121 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 F6UB75 175 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 TMEM178BH3BS89 294 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 HILS1P60008 231 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 C9orf139Q6ZV77 190 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 TMEM86BQ8N661 226 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 MDS2Q8NDY4 140 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 UPK3BQ9BT76 320 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 PRORYQ9H606 182 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 COL27A1Q8IZC6 1860 aaPredicted RBP3.13□□□□□ -1.91
VPS50-210ENST00000471188 NOTCH3Q9UM47 2321 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 ADGRG4Q8IZF6 3080 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 IGLV4-3A0A075B6K6 122 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 TRAV12-2A0A075B6T6 113 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 IGHV3OR16-10A0A075B7F0 116 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 NDUFC2O95298 119 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 IGHG2P01859 326 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 C9orf47Q6ZRZ4 202 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 LINC01561Q8N1V8 128 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 Q8N2B8 174 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 LY6G5BQ8NDX9 201 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 LINC00846Q9NV44 126 aa3.13□□□□□ -1.91
VPS50-210ENST00000471188 C2CD3Q4AC94 2353 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 KNCNA6PVL3 124 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 IGLV1-47P01700 117 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 IGHV1-69P01742 117 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 RNASE3P12724 160 aaKnown RBP3.12□□□□□ -1.91
VPS50-210ENST00000471188 RBM3P98179 157 aaKnown RBP3.12□□□□□ -1.91
VPS50-210ENST00000471188 C22orf34Q6ZV56 151 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 C20orf203Q8NBC4 194 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 GPR179Q6PRD1 2367 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 IGHV4OR15-8A0A075B7B6 117 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 A0A087WW49 117 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 ZFAND2AQ8N6M9 145 aa3.12□□□□□ -1.91
VPS50-210ENST00000471188 TRBV27A0A0K0K1C4 114 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 LYNX1G3V0Z9 82 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 CCL21O00585 134 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 LYNX1P0DP58 116 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 Q6JHZ5 121 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 VSIG2Q96IQ7 327 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 FAM218AQ96MZ4 157 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 SERP1Q9Y6X1 66 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 IGHV3-73A0A0B4J1V6 119 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 K7ENP7 123 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 IGKV3-20P01619 116 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 TRBV12-3P01733 135 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 HTN1P15515 57 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 DEFB123Q8N688 67 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 LINC00308Q8TCZ7 52 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 RNF5Q99942 180 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 Q9H8V8 135 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 DPM3Q9P2X0 92 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 SPTAN1Q13813 2472 aaKnown RBP3.11□□□□□ -1.91
VPS50-210ENST00000471188 SOCS3O14543 225 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 NCR3O14931 201 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 XCL1P47992 114 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 LPAL2Q16609 132 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 DGAT2L7PQ6IED9 249 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 C20orf173Q96LM9 149 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 XCL2Q9UBD3 114 aa3.11□□□□□ -1.91
VPS50-210ENST00000471188 KLK9Q9UKQ9 250 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms