RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 A0A0J9YX75 114 aa7.13□□□□□ -1.27
HDAC3-205ENST00000469550 TRBV27A0A0K0K1C4 114 aa7.13□□□□□ -1.27
HDAC3-205ENST00000469550 G3V318 75 aa7.13□□□□□ -1.27
HDAC3-205ENST00000469550 LEPROTO15243 131 aa7.13□□□□□ -1.27
HDAC3-205ENST00000469550 LGALS3P17931 250 aaKnown RBP7.13□□□□□ -1.27
HDAC3-205ENST00000469550 ZNRF2Q8NHG8 242 aa7.13□□□□□ -1.27
HDAC3-205ENST00000469550 SPANXA1Q9NS26 97 aa7.13□□□□□ -1.27
HDAC3-205ENST00000469550 TRRAPQ9Y4A5 3859 aa7.12□□□□□ -1.27
HDAC3-205ENST00000469550 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.12□□□□□ -1.27
HDAC3-205ENST00000469550 GNRH2O43555 120 aa7.12□□□□□ -1.27
HDAC3-205ENST00000469550 IGHV1-69P01742 117 aa7.12□□□□□ -1.27
HDAC3-205ENST00000469550 RPL13AP40429 203 aaKnown RBP7.12□□□□□ -1.27
HDAC3-205ENST00000469550 CRIP2P52943 208 aaPredicted RBP7.12□□□□□ -1.27
HDAC3-205ENST00000469550 TMEM170BQ5T4T1 132 aa7.12□□□□□ -1.27
HDAC3-205ENST00000469550 A4D1N5 150 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 C9JAW5 83 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 NDUFA4O00483 81 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 SPRY2O43597 315 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 NHLRC4P0CG21 123 aaPredicted RBP7.11□□□□□ -1.27
HDAC3-205ENST00000469550 RNASE4P34096 147 aaKnown RBP7.11□□□□□ -1.27
HDAC3-205ENST00000469550 GAGE2BQ13066 116 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 GAGE2EQ4V326 116 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 C19orf54Q5BKX5 351 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 GAGE2DQ9UEU5 116 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 TMEM223A0PJW6 202 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 LGALS9O00182 355 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 BRI3O95415 125 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 RHOHQ15669 191 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 ATXN8Q156A1 80 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 NSUN5P1Q3KNT7 163 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 SUMO4Q6EEV6 95 aa7.11□□□□□ -1.27
HDAC3-205ENST00000469550 SDHAF1A6NFY7 115 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 KLLNB2CW77 178 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 J3KRW8 73 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 SNCGO76070 127 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 ARL3P36405 182 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 EMP1P54849 157 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 PROK1P58294 105 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 C5orf56Q8N8D9 126 aa7.1□□□□□ -1.27
HDAC3-205ENST00000469550 TRAV41A0A0B4J266 112 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 TRBV30A0A0K0K1B3 111 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 EIF4EBP3O60516 100 aaPredicted RBP7.09□□□□□ -1.27
HDAC3-205ENST00000469550 NDUFV3P56181 108 aaKnown RBP7.09□□□□□ -1.27
HDAC3-205ENST00000469550 KRTAP10-3P60369 221 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 RPL39P62891 51 aaKnown RBP7.09□□□□□ -1.27
HDAC3-205ENST00000469550 LINC01620Q4KN68 170 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 Q8N1Y9 231 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 LINC01006Q8NI28 216 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 C16orf95Q9H693 158 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 TRBV10-2A0A0K0K1G8 114 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 M0R2P5 195 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 MRPL23Q16540 153 aaKnown RBP7.09□□□□□ -1.27
HDAC3-205ENST00000469550 MUSTN1Q8IVN3 82 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 RAX2Q96IS3 184 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 MDFICQ9P1T7 246 aa7.09□□□□□ -1.27
HDAC3-205ENST00000469550 PRKDCP78527 4128 aaKnown RBP7.08□□□□□ -1.28
HDAC3-205ENST00000469550 VWFP04275 2813 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 GAGE12JA6NER3 117 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 GAGE7O76087 117 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 IGHV4-59P01825 116 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 GAGE12FP0CL80 117 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 GAGE12GP0CL81 117 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 GAGE12IP0CL82 117 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 SAA4P35542 130 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 GAGE4Q13068 117 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 FAM159AQ6UWV7 190 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 TRPT1Q86TN4 253 aaKnown RBP7.08□□□□□ -1.28
HDAC3-205ENST00000469550 NTN5Q8WTR8 489 aaPredicted RBP7.08□□□□□ -1.28
HDAC3-205ENST00000469550 IFITM1P13164 125 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 UNQ9165/PRO28630Q6UXU0 137 aa7.08□□□□□ -1.28
HDAC3-205ENST00000469550 TRAV4A0A0B4J268 109 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 H3BUA1 57 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 ZNF22P17026 224 aaPredicted RBP7.07□□□□□ -1.28
HDAC3-205ENST00000469550 TTC32Q5I0X7 151 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 Q6ZSV7 163 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 USMG5Q96IX5 58 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 SS18L2Q9UHA2 77 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 VPREB3Q9UKI3 123 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 MOB4Q9Y3A3 225 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 TGP01266 2768 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 WNK1Q9H4A3 2382 aa7.07□□□□□ -1.28
HDAC3-205ENST00000469550 TRAV2A0A0B4J234 112 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 TRAV8-4A0A0B4J246 113 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 B5MCH6 92 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 F5H697 171 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 C20orf203Q8NBC4 194 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 C9orf85Q96MD7 179 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 ODF3Q96PU9 254 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 A0A0J9YXY3 114 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 F6UB75 175 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 H3BT86 120 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 M0QY20 66 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 NPFFO15130 113 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 JPT2Q9H910 190 aa7.06□□□□□ -1.28
HDAC3-205ENST00000469550 MUC4Q99102 2169 aa7.05□□□□□ -1.28
HDAC3-205ENST00000469550 A0A087WWL8 130 aa7.05□□□□□ -1.28
HDAC3-205ENST00000469550 FAM240AA0A1B0GVK7 77 aa7.05□□□□□ -1.28
HDAC3-205ENST00000469550 DEFB1P60022 68 aa7.05□□□□□ -1.28
HDAC3-205ENST00000469550 NOTCH1P46531 2555 aa7.05□□□□□ -1.28
HDAC3-205ENST00000469550 H3BMM0 161 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 301 ms