RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 DEFB135Q30KP9 77 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 IGFL4Q6B9Z1 124 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 C9orf47Q6ZRZ4 202 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 NRACQ8N912 160 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 PPDPFLQ8WWR9 84 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 C20orf173Q96LM9 149 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 WWC2-AS2Q96NR7 200 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 OVOL2Q9BRP0 275 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 PGPEP1Q9NXJ5 209 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 XCL2Q9UBD3 114 aa5.67□□□□□ -1.5
USP4-207ENST00000462673 A8MTW9 85 aa5.66□□□□□ -1.5
USP4-207ENST00000462673 F6UB75 175 aa5.66□□□□□ -1.5
USP4-207ENST00000462673 CFAP126Q5VTH2 177 aa5.66□□□□□ -1.5
USP4-207ENST00000462673 SH2D6Q7Z4S9 175 aa5.66□□□□□ -1.5
USP4-207ENST00000462673 GEMIN7Q9H840 131 aaKnown RBP5.66□□□□□ -1.5
USP4-207ENST00000462673 MEGF8Q7Z7M0 2845 aa5.66□□□□□ -1.5
USP4-207ENST00000462673 IGHV4-4A0A075B6R2 117 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 ZNF815PA8K554 130 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 M0R381 172 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 HLA-DMBP28068 263 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 UBE2D1P51668 147 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 PAPPA-AS1Q5QFB9 102 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 MAPKAPK5-AS1Q8N8E1 139 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 SYT8Q8NBV8 401 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 TOMM6Q96B49 74 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 LINC01587Q99440 93 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 AGPAT4-IT1Q9H0P7 198 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 MSRB1Q9NZV6 116 aa5.65□□□□□ -1.5
USP4-207ENST00000462673 CMYA5Q8N3K9 4069 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 TRBV20-1A0A075B6N2 111 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 IGHV3OR16-12A0A075B7B8 117 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 M0QXV9 152 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 LCE2BO14633 110 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 TSPAN13O95857 204 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 PPP1R17O96001 155 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 SPINK8P0C7L1 97 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 MED14OSP0DP75 135 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 GATA1P15976 413 aaPredicted RBP5.64□□□□□ -1.51
USP4-207ENST00000462673 SPINK13Q1W4C9 94 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 SPANXN1Q5VSR9 72 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 AMTNQ6UX39 209 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 SCGB1D4Q6XE38 83 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 Q6ZUT4 128 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 TEN1Q86WV5 123 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 CSNK1G2-AS1Q8NCQ2 148 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 SCGB3A1Q96QR1 104 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 C20orf78Q9BR46 151 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 PRADC1Q9BSG0 188 aa5.64□□□□□ -1.51
USP4-207ENST00000462673 TRAV26-1A0A087WT03 109 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 A8MWV9 139 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 PRAC2D3DTV9 90 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 TMEM262E9PQX1 116 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 H3BVH4 76 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 GAS8-AS1O95177 125 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 SPART-AS1P0CW21 52 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 PRB4P10163 310 aaPredicted RBP5.63□□□□□ -1.51
USP4-207ENST00000462673 UBE2D3P61077 147 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 UBE2D2P62837 147 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 ERCC8Q13216 396 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 CDIP1Q9H305 208 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 DPH3P1Q9H4G8 78 aa5.63□□□□□ -1.51
USP4-207ENST00000462673 TRAV21A0A0B4J279 112 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 IGKV3D-20A0A0C4DH25 116 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 LOC107984156A0A0G2JMH3 177 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 C3orf84H3BNL1 204 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 GIG44P09565 113 aaPredicted RBP5.62□□□□□ -1.51
USP4-207ENST00000462673 HTN1P15515 57 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 RNASE4P34096 147 aaKnown RBP5.62□□□□□ -1.51
USP4-207ENST00000462673 PSMB2P49721 201 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 DEFB1P60022 68 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 SUMO2P61956 95 aaKnown RBP5.62□□□□□ -1.51
USP4-207ENST00000462673 FAM159AQ6UWV7 190 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 ARL17AQ8IVW1 177 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 NEXN-AS1Q8NBZ9 246 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 C11orf45Q8TAV5 145 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 BAALCQ8WXS3 180 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 C16orf74Q96GX8 76 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 C11orf68Q9H3H3 251 aaKnown RBP5.62□□□□□ -1.51
USP4-207ENST00000462673 ERG28Q9UKR5 140 aa5.62□□□□□ -1.51
USP4-207ENST00000462673 TRAV12-2A0A075B6T6 113 aa5.61□□□□□ -1.51
USP4-207ENST00000462673 TRAV26-2A0A0B4J265 109 aa5.61□□□□□ -1.51
USP4-207ENST00000462673 TRAV12-3A0A0B4J271 114 aa5.61□□□□□ -1.51
USP4-207ENST00000462673 A0A0J9YWU9 116 aa5.61□□□□□ -1.51
USP4-207ENST00000462673 KLLNB2CW77 178 aa5.61□□□□□ -1.51
USP4-207ENST00000462673 RPL32P62910 135 aaKnown RBP5.61□□□□□ -1.51
USP4-207ENST00000462673 SRSF9Q13242 221 aaKnown RBP eCLIP5.61□□□□□ -1.51
USP4-207ENST00000462673 FAM19A4Q96LR4 140 aa5.61□□□□□ -1.51
USP4-207ENST00000462673 ANAPC13Q9BS18 74 aa5.61□□□□□ -1.51
USP4-207ENST00000462673 LYRM9A8MSI8 78 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 J3KRW8 73 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 MT-ATP8P03928 68 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 MGPP08493 103 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 ASIPP42127 132 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 SMCPP49901 116 aaPredicted RBP5.6□□□□□ -1.51
USP4-207ENST00000462673 XGP55808 180 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 ZFAND6Q6FIF0 208 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 C2orf66Q6UXQ4 117 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 C1orf158Q8N1D5 194 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 MUC7Q8TAX7 377 aa5.6□□□□□ -1.51
USP4-207ENST00000462673 TMEM263Q8WUH6 116 aaKnown RBP5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms