RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CASC2Q6XLA1 102 aa10.05□□□□□ -0.8
USP40-208ENST00000450966 ZNF843Q8N446 348 aa10.05□□□□□ -0.8
USP40-208ENST00000450966 ZNF524Q96C55 264 aa10.05□□□□□ -0.8
USP40-208ENST00000450966 CCKP06307 115 aa10.05□□□□□ -0.8
USP40-208ENST00000450966 FSTL3O95633 263 aa10.05□□□□□ -0.8
USP40-208ENST00000450966 IGHV4-4A0A075B6R2 117 aa10.05□□□□□ -0.8
USP40-208ENST00000450966 A0A087WVE0 104 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 PLAC8L1A1L4L8 177 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 K7ERS5 55 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 RNF185Q96GF1 192 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 NOP10Q9NPE3 64 aaKnown RBP10.04□□□□□ -0.8
USP40-208ENST00000450966 A8MZ25 164 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 K7EIM0 57 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 CRIP2P52943 208 aaPredicted RBP10.04□□□□□ -0.8
USP40-208ENST00000450966 KRTAP27-1Q3LI81 207 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 ETDCA0A1B0GVM5 59 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 A0A1W2PNU3 283 aaPredicted RBP10.04□□□□□ -0.8
USP40-208ENST00000450966 NBASA2RRP1 2371 aa10.04□□□□□ -0.8
USP40-208ENST00000450966 DOCK10Q96BY6 2186 aa10.03□□□□□ -0.8
USP40-208ENST00000450966 EIF4EBP1Q13541 118 aaPredicted RBP10.03□□□□□ -0.8
USP40-208ENST00000450966 COX7BP24311 80 aa10.03□□□□□ -0.8
USP40-208ENST00000450966 COL4A4P53420 1690 aaPredicted RBP10.03□□□□□ -0.8
USP40-208ENST00000450966 WIPF1O43516 503 aa10.03□□□□□ -0.8
USP40-208ENST00000450966 NRACQ8N912 160 aa10.03□□□□□ -0.8
USP40-208ENST00000450966 GTF3C1Q12789 2109 aa10.03□□□□□ -0.8
USP40-208ENST00000450966 WNK2Q9Y3S1 2297 aa10.03□□□□□ -0.8
USP40-208ENST00000450966 CACNA1HO95180 2353 aa10.02□□□□□ -0.8
USP40-208ENST00000450966 CTSZQ9UBR2 303 aa10.02□□□□□ -0.8
USP40-208ENST00000450966 SLPIP03973 132 aa10.02□□□□□ -0.81
USP40-208ENST00000450966 ODF3Q96PU9 254 aa10.02□□□□□ -0.81
USP40-208ENST00000450966 EML6Q6ZMW3 1958 aa10.02□□□□□ -0.81
USP40-208ENST00000450966 PSPHP1O15172 72 aa10.02□□□□□ -0.81
USP40-208ENST00000450966 CCL18P55774 89 aa10.02□□□□□ -0.81
USP40-208ENST00000450966 Q6ZS46 218 aa10.01□□□□□ -0.81
USP40-208ENST00000450966 SPART-AS1P0CW21 52 aa10.01□□□□□ -0.81
USP40-208ENST00000450966 PRAC2D3DTV9 90 aa10.01□□□□□ -0.81
USP40-208ENST00000450966 CD164Q04900 197 aa10.01□□□□□ -0.81
USP40-208ENST00000450966 CLPSL2Q6UWE3 100 aa10.01□□□□□ -0.81
USP40-208ENST00000450966 TECTAO75443 2155 aa10□□□□□ -0.81
USP40-208ENST00000450966 OBSL1O75147 1896 aa10□□□□□ -0.81
USP40-208ENST00000450966 CXCL6P80162 114 aa10□□□□□ -0.81
USP40-208ENST00000450966 C16orf74Q96GX8 76 aa10□□□□□ -0.81
USP40-208ENST00000450966 IGKV1D-37A0A075B6S9 117 aa10□□□□□ -0.81
USP40-208ENST00000450966 K7EQD1 137 aa10□□□□□ -0.81
USP40-208ENST00000450966 C4orf3Q8WVX3 66 aa10□□□□□ -0.81
USP40-208ENST00000450966 TNFRSF13BO14836 293 aaPredicted RBP9.99□□□□□ -0.81
USP40-208ENST00000450966 BCE1O60756 84 aa9.99□□□□□ -0.81
USP40-208ENST00000450966 ZNF80P51504 273 aaPredicted RBP9.99□□□□□ -0.81
USP40-208ENST00000450966 IGLV4-3A0A075B6K6 122 aa9.99□□□□□ -0.81
USP40-208ENST00000450966 K7EMT4 169 aa9.99□□□□□ -0.81
USP40-208ENST00000450966 IGLV11-55A0A075B6I3 123 aa9.99□□□□□ -0.81
USP40-208ENST00000450966 SEM1Q6ZVN7 128 aa9.99□□□□□ -0.81
USP40-208ENST00000450966 NOTCH3Q9UM47 2321 aa9.99□□□□□ -0.81
USP40-208ENST00000450966 IGHV4-38-2P0DP08 117 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 C11orf53Q8IXP5 236 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 DEFB136Q30KP8 78 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 PRO0461Q9UI25 63 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 CREBBPQ92793 2442 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 IBA57-AS1B1ANH7 110 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 ARHGAP21Q5T5U3 1957 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 ZNF407Q9C0G0 2248 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 TRBV10-1A0A0K0K1A3 114 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 ZFAND3Q9H8U3 227 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 SMAD5-AS1Q9Y6J3 95 aa9.98□□□□□ -0.81
USP40-208ENST00000450966 DYSFO75923 2080 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 LRCOL1A6NCL2 159 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 NOTCH4Q99466 2003 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 SLURP1P55000 103 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 SPAG11BQ08648 103 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.97□□□□□ -0.814e-8■■■■■ 40.1
USP40-208ENST00000450966 TRBV10-3A0A0K0K1G6 114 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 CTSGP08311 255 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 MUC6Q6W4X9 2439 aa9.97□□□□□ -0.81
USP40-208ENST00000450966 PRR4Q16378 134 aa9.96□□□□□ -0.81
USP40-208ENST00000450966 WFDC10AQ9H1F0 79 aa9.96□□□□□ -0.81
USP40-208ENST00000450966 NACAE9PAV3 2078 aa9.96□□□□□ -0.82
USP40-208ENST00000450966 IGLV2-23P01705 113 aa9.96□□□□□ -0.82
USP40-208ENST00000450966 CDKN2A-AS1Q9UH64 79 aa9.96□□□□□ -0.82
USP40-208ENST00000450966 PCNX2A6NKB5 2137 aa9.95□□□□□ -0.82
USP40-208ENST00000450966 APRG1Q8IVJ8 170 aa9.95□□□□□ -0.82
USP40-208ENST00000450966 C5orf56Q8N8D9 126 aa9.95□□□□□ -0.82
USP40-208ENST00000450966 TMEM254Q8TBM7 123 aa9.95□□□□□ -0.82
USP40-208ENST00000450966 GYPEP15421 78 aa9.95□□□□□ -0.82
USP40-208ENST00000450966 LIMD2Q9BT23 127 aa9.95□□□□□ -0.82
USP40-208ENST00000450966 CAMK2N2Q96S95 79 aa9.95□□□□□ -0.82
USP40-208ENST00000450966 IGHV7-81A0A0B4J1V7 117 aa9.94□□□□□ -0.82
USP40-208ENST00000450966 CRIP1P50238 77 aa9.94□□□□□ -0.82
USP40-208ENST00000450966 C2orf16Q68DN1 1984 aa9.94□□□□□ -0.82
USP40-208ENST00000450966 PLA2G2AP14555 144 aa9.94□□□□□ -0.82
USP40-208ENST00000450966 Q8N6K4 173 aa9.94□□□□□ -0.82
USP40-208ENST00000450966 IGKV4-1P06312 121 aa9.94□□□□□ -0.82
USP40-208ENST00000450966 SMCPP49901 116 aaPredicted RBP9.93□□□□□ -0.82
USP40-208ENST00000450966 GPHB5Q86YW7 130 aa9.93□□□□□ -0.82
USP40-208ENST00000450966 A6NDX4 124 aa9.92□□□□□ -0.82
USP40-208ENST00000450966 DNAJC9-AS1A6NH13 148 aa9.92□□□□□ -0.82
USP40-208ENST00000450966 IGHV4-31P0DP07 118 aa9.92□□□□□ -0.82
USP40-208ENST00000450966 CEMP1Q6PRD7 247 aaPredicted RBP9.92□□□□□ -0.82
USP40-208ENST00000450966 TRBV6-5A0A0K0K1A5 114 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 IGHV4OR15-8A0A075B7B6 117 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 A0A087WW49 117 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms