RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 COTL1Q14019 142 aa11.82□□□□□ -0.52
LIME1-202ENST00000444951 C20orf78Q9BR46 151 aa11.82□□□□□ -0.52
LIME1-202ENST00000444951 ALKBH7Q9BT30 221 aaPredicted RBP11.82□□□□□ -0.52
LIME1-202ENST00000444951 MAP1LC3AQ9H492 121 aa11.82□□□□□ -0.52
LIME1-202ENST00000444951 I3L3M4 83 aa11.81□□□□□ -0.52
LIME1-202ENST00000444951 VCYO14598 125 aa11.81□□□□□ -0.52
LIME1-202ENST00000444951 PHOX2AO14813 284 aa11.81□□□□□ -0.52
LIME1-202ENST00000444951 POLR2KP53803 58 aaKnown RBP11.81□□□□□ -0.52
LIME1-202ENST00000444951 LAMTOR2Q9Y2Q5 125 aa11.81□□□□□ -0.52
LIME1-202ENST00000444951 LELP1Q5T871 98 aa11.8□□□□□ -0.52
LIME1-202ENST00000444951 NTM-AS1Q6ZSK4 140 aa11.8□□□□□ -0.52
LIME1-202ENST00000444951 SMIM2Q9BVW6 85 aa11.8□□□□□ -0.52
LIME1-202ENST00000444951 MRPS16Q9Y3D3 137 aaKnown RBP11.8□□□□□ -0.52
LIME1-202ENST00000444951 TRBV6-8A0A0A6YYG3 113 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 TRAV8-6A0A0B4J262 113 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 TSHBP01222 138 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 FCER1GP30273 86 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 AMTP48728 403 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 TIRAPP58753 221 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 IQCJQ1A5X6 159 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 WFDC10BQ8IUB3 73 aa11.79□□□□□ -0.52
LIME1-202ENST00000444951 IGHV1-24A0A0C4DH33 117 aa11.78□□□□□ -0.52
LIME1-202ENST00000444951 TRBV27A0A0K0K1C4 114 aa11.78□□□□□ -0.52
LIME1-202ENST00000444951 TMEM97Q5BJF2 176 aa11.78□□□□□ -0.52
LIME1-202ENST00000444951 KIR2DL4Q99706 377 aa11.78□□□□□ -0.52
LIME1-202ENST00000444951 CHCHD5Q9BSY4 110 aa11.78□□□□□ -0.52
LIME1-202ENST00000444951 TRBV25-1A0A075B6N4 114 aa11.77□□□□□ -0.53
LIME1-202ENST00000444951 TCAPO15273 167 aa11.77□□□□□ -0.53
LIME1-202ENST00000444951 IFI27P40305 119 aaPredicted RBP11.77□□□□□ -0.53
LIME1-202ENST00000444951 PRSS3P2Q8NHM4 247 aa11.77□□□□□ -0.53
LIME1-202ENST00000444951 RPL32P62910 135 aaKnown RBP11.76□□□□□ -0.53
LIME1-202ENST00000444951 TMEM243Q9BU79 118 aa11.76□□□□□ -0.53
LIME1-202ENST00000444951 IGLV2-18A0A075B6J9 118 aa11.75□□□□□ -0.53
LIME1-202ENST00000444951 TMEM262E9PQX1 116 aa11.75□□□□□ -0.53
LIME1-202ENST00000444951 GAGE6Q13070 117 aa11.75□□□□□ -0.53
LIME1-202ENST00000444951 Q8N8P6 123 aa11.75□□□□□ -0.53
LIME1-202ENST00000444951 ABCA13Q86UQ4 5058 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.74□□□□□ -0.53
LIME1-202ENST00000444951 A0A1B0GVY2 172 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 IGKV2-29A2NJV5 120 aaPredicted RBP11.74□□□□□ -0.53
LIME1-202ENST00000444951 PRSS47A8MTI9 375 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 UBE2L6O14933 153 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 SIVA1O15304 175 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 IGHV3-30P01768 117 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 IGHV3-33P01772 117 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 IGHV3-30-3P0DP02 117 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 IGHV3-30-5P0DP03 117 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 Q8N3U1 123 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 C18orf32Q8TCD1 76 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 Q9H8V8 135 aa11.74□□□□□ -0.53
LIME1-202ENST00000444951 NXT2Q9NPJ8 142 aaKnown RBP11.74□□□□□ -0.53
LIME1-202ENST00000444951 FA2HQ7L5A8 372 aa11.73□□□□□ -0.53
LIME1-202ENST00000444951 UPK3BQ9BT76 320 aa11.73□□□□□ -0.53
LIME1-202ENST00000444951 CHCHD7Q9BUK0 85 aa11.73□□□□□ -0.53
LIME1-202ENST00000444951 A0A087WX48 190 aa11.71□□□□□ -0.53
LIME1-202ENST00000444951 M0R2N4 97 aa11.71□□□□□ -0.53
LIME1-202ENST00000444951 RTL8CO15255 209 aa11.71□□□□□ -0.53
LIME1-202ENST00000444951 NIT1Q86X76 327 aa11.71□□□□□ -0.53
LIME1-202ENST00000444951 RNASEKQ6P5S7 137 aaKnown RBP11.7□□□□□ -0.54
LIME1-202ENST00000444951 ESDP10768 282 aa11.69□□□□□ -0.54
LIME1-202ENST00000444951 LAGE3Q14657 143 aa11.69□□□□□ -0.54
LIME1-202ENST00000444951 MPV17L2Q567V2 206 aa11.69□□□□□ -0.54
LIME1-202ENST00000444951 AMMECR1LQ6DCA0 310 aa11.69□□□□□ -0.54
LIME1-202ENST00000444951 LINC00336Q6ZUF6 198 aa11.69□□□□□ -0.54
LIME1-202ENST00000444951 BAGE3Q86Y29 109 aa11.69□□□□□ -0.54
LIME1-202ENST00000444951 Q8N976 141 aa11.69□□□□□ -0.54
LIME1-202ENST00000444951 HSPG2P98160 4391 aa11.68□□□□□ -0.54
LIME1-202ENST00000444951 DNAH10OSP0CZ25 163 aa11.68□□□□□ -0.54
LIME1-202ENST00000444951 RPL39P62891 51 aaKnown RBP11.68□□□□□ -0.54
LIME1-202ENST00000444951 ORMDL2Q53FV1 153 aa11.68□□□□□ -0.54
LIME1-202ENST00000444951 C1orf196B1AJZ1 125 aa11.67□□□□□ -0.54
LIME1-202ENST00000444951 LINC00614P0C842 121 aa11.67□□□□□ -0.54
LIME1-202ENST00000444951 FGF6P10767 208 aa11.67□□□□□ -0.54
LIME1-202ENST00000444951 BTF3P20290 206 aaKnown RBP11.67□□□□□ -0.54
LIME1-202ENST00000444951 RBX1P62877 108 aa11.67□□□□□ -0.54
LIME1-202ENST00000444951 LINC01556Q5JQF7 62 aa11.67□□□□□ -0.54
LIME1-202ENST00000444951 C20orf203Q8NBC4 194 aa11.67□□□□□ -0.54
LIME1-202ENST00000444951 URB1-AS1Q96HZ7 61 aa11.67□□□□□ -0.54
LIME1-202ENST00000444951 RAB5BP61020 215 aa11.66□□□□□ -0.54
LIME1-202ENST00000444951 PKIAP61925 76 aa11.66□□□□□ -0.54
LIME1-202ENST00000444951 TMEM18Q96B42 140 aa11.66□□□□□ -0.54
LIME1-202ENST00000444951 AP5S1Q9NUS5 200 aa11.66□□□□□ -0.54
LIME1-202ENST00000444951 LRP1BQ9NZR2 4599 aa11.66□□□□□ -0.54
LIME1-202ENST00000444951 NBDYA0A0U1RRE5 68 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 PRSS29PA6NIE9 313 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BKO60814 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 ANGP03950 147 aaKnown RBP11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BJP06899 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BOP23527 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BBP33778 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BDP58876 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BCP62807 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 PMCHL1Q16048 86 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST2H2BEQ16778 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BHQ93079 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BNQ99877 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 HIST1H2BMQ99879 126 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 KLK12Q9UKR0 248 aa11.65□□□□□ -0.54
LIME1-202ENST00000444951 IGLV4-60A0A075B6I1 120 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms