RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MIFP14174 115 aa9.61□□□□□ -0.87
LIMS1-204ENST00000409441 ZNF25P17030 456 aaPredicted RBP9.61□□□□□ -0.87
LIMS1-204ENST00000409441 GAGE1Q13065 139 aa9.61□□□□□ -0.87
LIMS1-204ENST00000409441 FAM74A4Q5TZK3 123 aa9.61□□□□□ -0.87
LIMS1-204ENST00000409441 NEXN-AS1Q8NBZ9 246 aa9.61□□□□□ -0.87
LIMS1-204ENST00000409441 KRTAP4-6Q9BYQ5 205 aa9.61□□□□□ -0.87
LIMS1-204ENST00000409441 MRPL35Q9NZE8 188 aaKnown RBP9.61□□□□□ -0.87
LIMS1-204ENST00000409441 SDHAF1A6NFY7 115 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 RHOHQ15669 191 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 ZFP2Q6ZN57 461 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 IGHV4-28A0A0C4DH34 117 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 A8MWV9 139 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 M0R2P5 195 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 DEFB4AO15263 64 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 NMUP48645 174 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 ZC2HC1BQ5TFG8 222 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 Q8NAQ8 132 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 SPXQ9BT56 116 aa9.6□□□□□ -0.87
LIMS1-204ENST00000409441 CHTOPQ9Y3Y2 248 aaKnown RBP9.6□□□□□ -0.87
LIMS1-204ENST00000409441 ORAOV1Q8WV07 137 aa9.59□□□□□ -0.87
LIMS1-204ENST00000409441 BAALCQ8WXS3 180 aa9.59□□□□□ -0.87
LIMS1-204ENST00000409441 TMEM141Q96I45 108 aa9.59□□□□□ -0.87
LIMS1-204ENST00000409441 TENM3Q9P273 2699 aa9.58□□□□□ -0.88
LIMS1-204ENST00000409441 PRKDCP78527 4128 aaKnown RBP9.58□□□□□ -0.88
LIMS1-204ENST00000409441 EMP1P54849 157 aa9.58□□□□□ -0.88
LIMS1-204ENST00000409441 HSD52Q0P140 79 aa9.58□□□□□ -0.88
LIMS1-204ENST00000409441 TMEM97Q5BJF2 176 aa9.58□□□□□ -0.88
LIMS1-204ENST00000409441 TMEM263Q8WUH6 116 aaKnown RBP9.58□□□□□ -0.88
LIMS1-204ENST00000409441 TIMM17AQ99595 171 aa9.58□□□□□ -0.88
LIMS1-204ENST00000409441 HIGD1BQ9P298 99 aa9.58□□□□□ -0.88
LIMS1-204ENST00000409441 SEC11AP67812 179 aa9.57□□□□□ -0.88
LIMS1-204ENST00000409441 NEGR1Q7Z3B1 354 aa9.57□□□□□ -0.88
LIMS1-204ENST00000409441 RNASE8Q8TDE3 154 aaKnown RBP9.57□□□□□ -0.88
LIMS1-204ENST00000409441 C16orf74Q96GX8 76 aa9.57□□□□□ -0.88
LIMS1-204ENST00000409441 COX11Q9Y6N1 276 aa9.57□□□□□ -0.88
LIMS1-204ENST00000409441 COL7A1Q02388 2944 aa9.57□□□□□ -0.88
LIMS1-204ENST00000409441 A0A0J9YWU9 116 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 IGIPA6NJ69 53 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 PAPPA-AS1Q5QFB9 102 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 PCP2Q8IVA1 136 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 C11orf72Q8NBR9 251 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 IGKV2D-26A0A0A0MRZ7 120 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 PLAC8L1A1L4L8 177 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 I3L3M4 83 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 RHODO00212 210 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 UFSP1Q6NVU6 142 aa9.56□□□□□ -0.88
LIMS1-204ENST00000409441 DNAH9Q9NYC9 4486 aa9.55□□□□□ -0.88
LIMS1-204ENST00000409441 PRSS29PA6NIE9 313 aa9.55□□□□□ -0.88
LIMS1-204ENST00000409441 C11orf68Q9H3H3 251 aaKnown RBP9.55□□□□□ -0.88
LIMS1-204ENST00000409441 PMVKQ15126 192 aa9.54□□□□□ -0.88
LIMS1-204ENST00000409441 NOP10Q9NPE3 64 aaKnown RBP9.54□□□□□ -0.88
LIMS1-204ENST00000409441 NACAE9PAV3 2078 aa9.54□□□□□ -0.88
LIMS1-204ENST00000409441 TAX1BP3O14907 124 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 TSHBP01222 138 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 TCTAP57738 103 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 A6NDN8 102 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 RS1O15537 224 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 SPART-AS1P0CW21 52 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 DAZ2Q13117 558 aaKnown RBP9.53□□□□□ -0.88
LIMS1-204ENST00000409441 FAM222AQ5U5X8 452 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 DNAJC30Q96LL9 226 aa9.53□□□□□ -0.88
LIMS1-204ENST00000409441 HUWE1Q7Z6Z7 4374 aaKnown RBP9.52□□□□□ -0.89
LIMS1-204ENST00000409441 CFAP126Q5VTH2 177 aa9.52□□□□□ -0.89
LIMS1-204ENST00000409441 C20orf203Q8NBC4 194 aa9.52□□□□□ -0.89
LIMS1-204ENST00000409441 IL17DQ8TAD2 202 aa9.52□□□□□ -0.89
LIMS1-204ENST00000409441 TGP01266 2768 aa9.52□□□□□ -0.89
LIMS1-204ENST00000409441 TRBV25-1A0A075B6N4 114 aa9.51□□□□□ -0.89
LIMS1-204ENST00000409441 E9PLD3 99 aa9.51□□□□□ -0.89
LIMS1-204ENST00000409441 RPL39P62891 51 aaKnown RBP9.51□□□□□ -0.89
LIMS1-204ENST00000409441 CST9LQ9H4G1 147 aa9.51□□□□□ -0.89
LIMS1-204ENST00000409441 CELA1Q9UNI1 258 aa9.51□□□□□ -0.89
LIMS1-204ENST00000409441 TNFRSF18Q9Y5U5 241 aa9.51□□□□□ -0.89
LIMS1-204ENST00000409441 STAB2Q8WWQ8 2551 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 LYRM9A8MSI8 78 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 IGHV3-53P01767 116 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 NPSP0C0P6 89 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 P0DMU3 169 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 FAM231AP0DMU4 169 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 FAM231CP0DMU5 169 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 TAL2Q16559 108 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 C11orf45Q8TAV5 145 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 CHAC1Q9BUX1 264 aa9.5□□□□□ -0.89
LIMS1-204ENST00000409441 IGLV4-69A0A075B6H9 119 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 TRGV1A0A0A0MS02 117 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 H3BRM9 83 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 DEFB130BP0DP73 79 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 DEFB130AP0DP74 79 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 HERVK_113P61574 105 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 LCE2CQ5TA81 110 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 Q6ZTI0 123 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 MRPL16Q9NX20 251 aaKnown RBP9.49□□□□□ -0.89
LIMS1-204ENST00000409441 IGHV3-73A0A0B4J1V6 119 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 GAGE12BA1L429 117 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 GAGE7O76087 117 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 GAGE12FP0CL80 117 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 GAGE12GP0CL81 117 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 GAGE12IP0CL82 117 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 C12orf74Q32Q52 190 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 PYGO1Q9Y3Y4 419 aa9.49□□□□□ -0.89
LIMS1-204ENST00000409441 TRAV8-6A0A0B4J262 113 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms