RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 Q8N8P6 123 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 SMIM2Q9BVW6 85 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 VCYO14598 125 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 Q0VG73 95 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 TTC32Q5I0X7 151 aa4.74□□□□□ -1.65
LIMA1-202ENST00000394943 IGHV1-24A0A0C4DH33 117 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 NBDYA0A0U1RRE5 68 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 OR10J3Q5JRS4 329 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 RPL39LQ96EH5 51 aaKnown RBP4.73□□□□□ -1.65
LIMA1-202ENST00000394943 TGIF2-C20orf24A0A0A6YYL0 155 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 A0A1B0GVY2 172 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 CCL25O15444 150 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 URB1-AS1Q96HZ7 61 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 ST20Q9HBF5 79 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 NPYP01303 97 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 C10orf126Q8N4M7 172 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 KRTAP1-5Q9BYS1 174 aa4.73□□□□□ -1.65
LIMA1-202ENST00000394943 TGP01266 2768 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 A0A0J9YY99 117 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 SDHAF1A6NFY7 115 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 D6R8Y8 96 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 ODF1Q14990 250 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 MRPL54Q6P161 138 aaKnown RBP4.72□□□□□ -1.65
LIMA1-202ENST00000394943 Q9H8V8 135 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 NXT2Q9NPJ8 142 aaKnown RBP4.72□□□□□ -1.65
LIMA1-202ENST00000394943 APCSP02743 223 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 COA6Q5JTJ3 125 aaKnown RBP4.72□□□□□ -1.65
LIMA1-202ENST00000394943 LINC01561Q8N1V8 128 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 PACRGQ96M98 296 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-202ENST00000394943 TNFRSF18Q9Y5U5 241 aa4.72□□□□□ -1.65
LIMA1-202ENST00000394943 IGHV3-73A0A0B4J1V6 119 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 TRAV26-2A0A0B4J265 109 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 MUC21A0A0G2JKD1 596 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 MUC21A0A140T8X8 626 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 GAGE12JA6NER3 117 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 SIVA1O15304 175 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 S100A6P06703 90 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 GAGE1Q13065 139 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 GAGE4Q13068 117 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 GAGE5Q13069 117 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 GAGE13Q4V321 117 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 PDZD11Q5EBL8 140 aa4.71□□□□□ -1.65
LIMA1-202ENST00000394943 PKHD1L1Q86WI1 4243 aa4.71□□□□□ -1.66
LIMA1-202ENST00000394943 FAM74A4Q5TZK3 123 aa4.71□□□□□ -1.66
LIMA1-202ENST00000394943 PRELID3AQ96N28 172 aa4.71□□□□□ -1.66
LIMA1-202ENST00000394943 MRPL18Q9H0U6 180 aaKnown RBP4.71□□□□□ -1.66
LIMA1-202ENST00000394943 UBE2D4Q9Y2X8 147 aa4.71□□□□□ -1.66
LIMA1-202ENST00000394943 TRAV8-6A0A0B4J262 113 aa4.71□□□□□ -1.66
LIMA1-202ENST00000394943 LINC00336Q6ZUF6 198 aa4.71□□□□□ -1.66
LIMA1-202ENST00000394943 C20orf203Q8NBC4 194 aa4.71□□□□□ -1.66
LIMA1-202ENST00000394943 TRBV25-1A0A075B6N4 114 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 MGPP08493 103 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 WFDC10BQ8IUB3 73 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 TPPP3Q9BW30 176 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 NUDT3O95989 172 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 CKS2P33552 79 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 CBLN2Q8IUK8 224 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 TOMM6Q96B49 74 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 AMELXQ99217 191 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 SPANXA1Q9NS26 97 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 RAB5AP20339 215 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 NFE4Q86UQ8 179 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 C18orf32Q8TCD1 76 aa4.7□□□□□ -1.66
LIMA1-202ENST00000394943 A0A096LNJ9 63 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 IGIPA6NJ69 53 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 RTL8CO15255 209 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 G0S2P27469 103 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 SMAGPQ0VAQ4 97 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 COTL1Q14019 142 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 CHCHD1Q96BP2 118 aaKnown RBP4.69□□□□□ -1.66
LIMA1-202ENST00000394943 TIMM17AQ99595 171 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 TMEM243Q9BU79 118 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 MAP1LC3AQ9H492 121 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 IGHV3-38A0A0C4DH36 116 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 HTN3P15516 51 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 CAMPP49913 170 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 LINC00310P59036 64 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 ORMDL2Q53FV1 153 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 ENHOQ6UWT2 76 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 CDC42SE2Q9NRR3 84 aa4.69□□□□□ -1.66
LIMA1-202ENST00000394943 TRAV8-4A0A0B4J246 113 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 LRCOL1A6NCL2 159 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 SMKR1H3BMG3 65 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 PMCHP20382 165 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 TRAV9-2A0A087WT02 112 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 TRAPPC1Q9Y5R8 145 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 OR5A1Q8NGJ0 315 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 COX11Q9Y6N1 276 aa4.68□□□□□ -1.66
LIMA1-202ENST00000394943 F5H697 171 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 RBX1P62877 108 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 LINC00173Q6ZV60 143 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 C6orf223Q8N319 242 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 IGLV5-45A0A087WSX0 123 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 F8WDY8 70 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 MIAQ16674 131 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 KIR2DL4Q99706 377 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 VPS13BQ7Z7G8 4022 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 TRAV8-3A0A0A6YYJ7 113 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 FCER1GP30273 86 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 SSTP61278 116 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms