RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 DPH3Q96FX2 82 aa10.63□□□□□ -0.71
SHROOM1-203ENST00000378679 MRPS12O15235 138 aaKnown RBP10.63□□□□□ -0.71
SHROOM1-203ENST00000378679 DNAL4O96015 105 aa10.63□□□□□ -0.71
SHROOM1-203ENST00000378679 HILS1P60008 231 aa10.63□□□□□ -0.71
SHROOM1-203ENST00000378679 ZFP2Q6ZN57 461 aa10.63□□□□□ -0.71
SHROOM1-203ENST00000378679 DEFB135Q30KP9 77 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 GATD1Q8NB37 220 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 C16orf74Q96GX8 76 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 MYMXA0A1B0GTQ4 84 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 SS18Q15532 418 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 CITED1Q99966 193 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 FLNAP21333 2647 aaKnown RBP10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 IGLL5B9A064 214 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 G3V4G9 280 aa10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 CRIP2P52943 208 aaPredicted RBP10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 RPL39P62891 51 aaKnown RBP10.62□□□□□ -0.71
SHROOM1-203ENST00000378679 AGRNO00468 2067 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 TRAV8-4A0A0B4J246 113 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 F8W1H4 67 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 CRLF1O75462 422 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 SCGB1A1P11684 91 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 EDN2P20800 178 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 NDUFA11Q86Y39 141 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 MRAPQ8TCY5 172 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 ESM1Q9NQ30 184 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 INSL3P51460 131 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 DEFB4AO15263 64 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 C11orf21Q9P2W6 132 aa10.61□□□□□ -0.71
SHROOM1-203ENST00000378679 ITPR3Q14573 2671 aa10.6□□□□□ -0.71
SHROOM1-203ENST00000378679 USP24Q9UPU5 2620 aa10.6□□□□□ -0.71
SHROOM1-203ENST00000378679 ODF3Q96PU9 254 aa10.6□□□□□ -0.71
SHROOM1-203ENST00000378679 TRAV8-3A0A0A6YYJ7 113 aa10.6□□□□□ -0.71
SHROOM1-203ENST00000378679 BOD1L2Q8IYS8 172 aa10.6□□□□□ -0.71
SHROOM1-203ENST00000378679 IGKV2D-26A0A0A0MRZ7 120 aa10.59□□□□□ -0.71
SHROOM1-203ENST00000378679 PRR9Q5T870 116 aa10.59□□□□□ -0.71
SHROOM1-203ENST00000378679 ASH1LQ9NR48 2969 aaKnown RBP10.59□□□□□ -0.71
SHROOM1-203ENST00000378679 RS1O15537 224 aa10.59□□□□□ -0.71
SHROOM1-203ENST00000378679 DCANP1Q8TF63 244 aa10.59□□□□□ -0.71
SHROOM1-203ENST00000378679 C2orf82Q6UX34 121 aa10.59□□□□□ -0.71
SHROOM1-203ENST00000378679 ATRQ13535 2644 aa10.58□□□□□ -0.72
SHROOM1-203ENST00000378679 J3QQQ9 107 aa10.58□□□□□ -0.72
SHROOM1-203ENST00000378679 FGF6P10767 208 aa10.58□□□□□ -0.72
SHROOM1-203ENST00000378679 NDUFA12Q9UI09 145 aa10.58□□□□□ -0.72
SHROOM1-203ENST00000378679 SMG1Q96Q15 3661 aaKnown RBP10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 GYPEP15421 78 aa10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 TMEM263Q8WUH6 116 aaKnown RBP10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 A0A0J9YXV3 536 aa10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 CLPSL2Q6UWE3 100 aa10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 ANGP03950 147 aaKnown RBP10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 Q6ZQT7 251 aa10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 DNAJC30Q96LL9 226 aa10.57□□□□□ -0.72
SHROOM1-203ENST00000378679 SPART-AS1P0CW21 52 aa10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 UBE2DNLQ8IWF7 75 aa10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 TRBV7-3A0A075B6L6 115 aa10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 K7EQD1 137 aa10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 Q6ZTI0 123 aa10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 NTN5Q8WTR8 489 aaPredicted RBP10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 CRYBA4P53673 196 aa10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 C2orf91Q6ZV80 131 aa10.56□□□□□ -0.72
SHROOM1-203ENST00000378679 PPDPFLQ8WWR9 84 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 URB1-AS1Q96HZ7 61 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 P0DMU3 169 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 FAM231AP0DMU4 169 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 FAM231CP0DMU5 169 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 ATP5G1P05496 136 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 SPANXA1Q9NS26 97 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 RBMY1BA6NDE4 496 aaKnown RBP10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 RBMY1EA6NEQ0 496 aaKnown RBP10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 RBMY1DP0C7P1 496 aaKnown RBP10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 RBMY1A1P0DJD3 496 aaKnown RBP10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 RBMY1CP0DJD4 496 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 ATP6V0E2Q8NHE4 81 aa10.55□□□□□ -0.72
SHROOM1-203ENST00000378679 SMIM20Q8N5G0 67 aa10.54□□□□□ -0.72
SHROOM1-203ENST00000378679 PFN2P35080 140 aa10.54□□□□□ -0.72
SHROOM1-203ENST00000378679 ODF1Q14990 250 aa10.54□□□□□ -0.72
SHROOM1-203ENST00000378679 WFDC10AQ9H1F0 79 aa10.54□□□□□ -0.72
SHROOM1-203ENST00000378679 KLLNB2CW77 178 aa10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 HERVK_113P63121 156 aa10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 GAS8-AS1O95177 125 aa10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 PRM2P04554 102 aa10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 RNASE3P12724 160 aaKnown RBP10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 HHLA3Q9XRX5 114 aa10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 SLC25A20O43772 301 aa10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 DAZ2Q13117 558 aaKnown RBP10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 DAZ4Q86SG3 579 aaKnown RBP10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 DAZ3Q9NR90 486 aaKnown RBP10.53□□□□□ -0.72
SHROOM1-203ENST00000378679 SIVA1O15304 175 aa10.52□□□□□ -0.72
SHROOM1-203ENST00000378679 BRI3O95415 125 aa10.52□□□□□ -0.72
SHROOM1-203ENST00000378679 LINC00482Q8N8I6 264 aa10.52□□□□□ -0.72
SHROOM1-203ENST00000378679 C20orf203Q8NBC4 194 aa10.52□□□□□ -0.73
SHROOM1-203ENST00000378679 TOMM6Q96B49 74 aa10.52□□□□□ -0.73
SHROOM1-203ENST00000378679 RNF185Q96GF1 192 aa10.52□□□□□ -0.73
SHROOM1-203ENST00000378679 XCL1P47992 114 aa10.51□□□□□ -0.73
SHROOM1-203ENST00000378679 OPRPNQ99935 248 aaPredicted RBP10.51□□□□□ -0.73
SHROOM1-203ENST00000378679 BAALCQ8WXS3 180 aa10.51□□□□□ -0.73
SHROOM1-203ENST00000378679 C5orf38Q86SI9 138 aa10.5□□□□□ -0.73
SHROOM1-203ENST00000378679 TIMM17AQ99595 171 aa10.5□□□□□ -0.73
SHROOM1-203ENST00000378679 MT-ATP8P03928 68 aa10.5□□□□□ -0.73
SHROOM1-203ENST00000378679 S100A7L2Q5SY68 101 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms