RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RPL36AP83881 106 aaKnown RBP13.95□□□□□ -0.18
CLN3-205ENST00000359984 GAGE1Q13065 139 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 GAGE4Q13068 117 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 GAGE5Q13069 117 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 GAGE13Q4V321 117 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 RPL36ALQ969Q0 106 aaKnown RBP13.95□□□□□ -0.18
CLN3-205ENST00000359984 AP5S1Q9NUS5 200 aa13.95□□□□□ -0.18
CLN3-205ENST00000359984 TRBV27A0A0K0K1C4 114 aa13.94□□□□□ -0.18
CLN3-205ENST00000359984 VSIG2Q96IQ7 327 aa13.94□□□□□ -0.18
CLN3-205ENST00000359984 A0A0J9YY99 117 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 LINC01546A6NGU7 62 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 TCAPO15273 167 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 LINC00173Q6ZV60 143 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 DEFB104AQ8WTQ1 72 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 TRAV26-1A0A087WT03 109 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 LEPROTL1O95214 131 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 GYPEP15421 78 aa13.93□□□□□ -0.18
CLN3-205ENST00000359984 UBE2D3P61077 147 aa13.92□□□□□ -0.18
CLN3-205ENST00000359984 UBE2D2P62837 147 aa13.92□□□□□ -0.18
CLN3-205ENST00000359984 SPATA12Q7Z6I5 190 aa13.92□□□□□ -0.18
CLN3-205ENST00000359984 STAB2Q8WWQ8 2551 aa13.92□□□□□ -0.18
CLN3-205ENST00000359984 A0A096LNJ9 63 aa13.91□□□□□ -0.18
CLN3-205ENST00000359984 I3L3M4 83 aa13.91□□□□□ -0.18
CLN3-205ENST00000359984 PHLDA1Q8WV24 401 aaPredicted RBP13.91□□□□□ -0.18
CLN3-205ENST00000359984 C14orf144Q96I85 54 aa13.91□□□□□ -0.18
CLN3-205ENST00000359984 VAMP8Q9BV40 100 aa13.91□□□□□ -0.18
CLN3-205ENST00000359984 IGHV3-38A0A0C4DH36 116 aa13.91□□□□□ -0.18
CLN3-205ENST00000359984 LINC00694P0DN24 101 aa13.91□□□□□ -0.18
CLN3-205ENST00000359984 DEFB131BA0A096LNP1 70 aa13.9□□□□□ -0.18
CLN3-205ENST00000359984 KIR2DL4Q99706 377 aa13.9□□□□□ -0.18
CLN3-205ENST00000359984 FBN3Q75N90 2809 aa13.89□□□□□ -0.19
CLN3-205ENST00000359984 TSHBP01222 138 aa13.89□□□□□ -0.19
CLN3-205ENST00000359984 SYS1-DBNDD2H3BUS1 97 aa13.89□□□□□ -0.19
CLN3-205ENST00000359984 LAGE3Q14657 143 aa13.89□□□□□ -0.19
CLN3-205ENST00000359984 PAM16Q9Y3D7 125 aa13.89□□□□□ -0.19
CLN3-205ENST00000359984 DAZ4Q86SG3 579 aaKnown RBP13.88□□□□□ -0.19
CLN3-205ENST00000359984 DAZ3Q9NR90 486 aaKnown RBP13.88□□□□□ -0.19
CLN3-205ENST00000359984 HSPB8Q9UJY1 196 aa13.88□□□□□ -0.19
CLN3-205ENST00000359984 K7EMI3 77 aa13.87□□□□□ -0.19
CLN3-205ENST00000359984 TRAV10A0A0B4J240 114 aa13.87□□□□□ -0.19
CLN3-205ENST00000359984 FCER1GP30273 86 aa13.87□□□□□ -0.19
CLN3-205ENST00000359984 ORMDL2Q53FV1 153 aa13.86□□□□□ -0.19
CLN3-205ENST00000359984 COTL1Q14019 142 aa13.85□□□□□ -0.19
CLN3-205ENST00000359984 PET117Q6UWS5 81 aa13.85□□□□□ -0.19
CLN3-205ENST00000359984 NUDT3O95989 172 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 ATP6V0E2Q8NHE4 81 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 MAP1LC3CQ9BXW4 147 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 A0A096LPF7 62 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 H3BNG1 76 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 SPATA45Q537H7 98 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 ATOH7Q8N100 152 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 ICOSQ9Y6W8 199 aa13.84□□□□□ -0.19
CLN3-205ENST00000359984 MRPL23Q16540 153 aaKnown RBP13.83□□□□□ -0.2
CLN3-205ENST00000359984 NTM-AS1Q6ZSK4 140 aa13.83□□□□□ -0.2
CLN3-205ENST00000359984 MIEN1Q9BRT3 115 aa13.83□□□□□ -0.2
CLN3-205ENST00000359984 HBDP02042 147 aa13.82□□□□□ -0.2
CLN3-205ENST00000359984 CBY1Q9Y3M2 126 aa13.82□□□□□ -0.2
CLN3-205ENST00000359984 TRAV9-2A0A087WT02 112 aa13.82□□□□□ -0.2
CLN3-205ENST00000359984 MAJINQ3KP22 176 aa13.82□□□□□ -0.2
CLN3-205ENST00000359984 LINC01545Q5VT33 79 aa13.81□□□□□ -0.2
CLN3-205ENST00000359984 CHCHD7Q9BUK0 85 aa13.81□□□□□ -0.2
CLN3-205ENST00000359984 GTSF1LQ9H1H1 148 aa13.81□□□□□ -0.2
CLN3-205ENST00000359984 C20orf202A1L168 122 aa13.8□□□□□ -0.2
CLN3-205ENST00000359984 IGLC3P0DOY3 106 aa13.79□□□□□ -0.2
CLN3-205ENST00000359984 C2orf66Q6UXQ4 117 aa13.79□□□□□ -0.2
CLN3-205ENST00000359984 C20orf203Q8NBC4 194 aa13.79□□□□□ -0.2
CLN3-205ENST00000359984 TOMM6Q96B49 74 aa13.79□□□□□ -0.2
CLN3-205ENST00000359984 RPL39P62891 51 aaKnown RBP13.78□□□□□ -0.2
CLN3-205ENST00000359984 SH2D6Q7Z4S9 175 aa13.78□□□□□ -0.2
CLN3-205ENST00000359984 G0S2P27469 103 aa13.78□□□□□ -0.2
CLN3-205ENST00000359984 CYSLTR1Q9Y271 337 aa13.78□□□□□ -0.2
CLN3-205ENST00000359984 TRBV6-8A0A0A6YYG3 113 aa13.77□□□□□ -0.21
CLN3-205ENST00000359984 TMEM97Q5BJF2 176 aa13.76□□□□□ -0.21
CLN3-205ENST00000359984 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.76□□□□□ -0.21
CLN3-205ENST00000359984 IGKV2-29A2NJV5 120 aaPredicted RBP13.76□□□□□ -0.21
CLN3-205ENST00000359984 TRBV25-1A0A075B6N4 114 aa13.75□□□□□ -0.21
CLN3-205ENST00000359984 UQCR10Q9UDW1 63 aa13.75□□□□□ -0.21
CLN3-205ENST00000359984 IGLL5B9A064 214 aa13.74□□□□□ -0.21
CLN3-205ENST00000359984 IFI27L1Q96BM0 104 aa13.74□□□□□ -0.21
CLN3-205ENST00000359984 TMEM243Q9BU79 118 aa13.74□□□□□ -0.21
CLN3-205ENST00000359984 LBHQ53QV2 105 aaPredicted RBP13.74□□□□□ -0.21
CLN3-205ENST00000359984 LGALS9CQ6DKI2 356 aa13.74□□□□□ -0.21
CLN3-205ENST00000359984 SVIPQ8NHG7 77 aa13.74□□□□□ -0.21
CLN3-205ENST00000359984 SCGB3A1Q96QR1 104 aa13.74□□□□□ -0.21
CLN3-205ENST00000359984 LYPD5Q6UWN5 251 aa13.73□□□□□ -0.21
CLN3-205ENST00000359984 MRPL52Q86TS9 123 aaKnown RBP13.73□□□□□ -0.21
CLN3-205ENST00000359984 C15orf53Q8NAA6 179 aa13.73□□□□□ -0.21
CLN3-205ENST00000359984 SNHG12Q9BXW3 62 aa13.73□□□□□ -0.21
CLN3-205ENST00000359984 LINC01549A6NIU2 74 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 IGIPA6NJ69 53 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 H0Y8G0 127 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 EREGO14944 169 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 PMCHL2Q9BQD1 86 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 hDV102S1A0JD36 115 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 ERASQ7Z444 233 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 C2orf88Q9BSF0 95 aa13.72□□□□□ -0.21
CLN3-205ENST00000359984 ATP5LO75964 103 aa13.71□□□□□ -0.21
CLN3-205ENST00000359984 CEMP1Q6PRD7 247 aaPredicted RBP13.71□□□□□ -0.21
CLN3-205ENST00000359984 TIRAPP58753 221 aa13.7□□□□□ -0.22
CLN3-205ENST00000359984 CHCHD5Q9BSY4 110 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms