RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 LYRM9A8MSI8 78 aa13.8□□□□□ -0.2
SHANK1-202ENST00000359082 LINC00482Q8N8I6 264 aa13.8□□□□□ -0.2
SHANK1-202ENST00000359082 MT-ATP8P03928 68 aa13.8□□□□□ -0.2
SHANK1-202ENST00000359082 Q8NA96 180 aa13.8□□□□□ -0.2
SHANK1-202ENST00000359082 PIK3CD-AS1Q5SR53 167 aa13.79□□□□□ -0.2
SHANK1-202ENST00000359082 A0A1B0GXF2 115 aa13.79□□□□□ -0.2
SHANK1-202ENST00000359082 DYSFO75923 2080 aa13.79□□□□□ -0.2
SHANK1-202ENST00000359082 C11orf1Q9H5F2 150 aa13.79□□□□□ -0.2
SHANK1-202ENST00000359082 IGLV2-8P01709 118 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 CDKN2A-AS1Q9UH64 79 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 NOTCH3Q9UM47 2321 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 INAFM1C9JVW0 142 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 HRCT1Q6UXD1 115 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 C20orf197Q8N268 126 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 RIF1Q5UIP0 2472 aaKnown RBP13.78□□□□□ -0.2
SHANK1-202ENST00000359082 DEFB114Q30KQ6 69 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 ODF3Q96PU9 254 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 ABCA4P78363 2273 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 IGLC6P0CF74 106 aa13.78□□□□□ -0.2
SHANK1-202ENST00000359082 C3orf22Q8N5N4 141 aa13.77□□□□□ -0.2
SHANK1-202ENST00000359082 H7C423 109 aa13.77□□□□□ -0.21
SHANK1-202ENST00000359082 PROK1P58294 105 aa13.77□□□□□ -0.21
SHANK1-202ENST00000359082 KIR2DL5BQ8NHK3 375 aa13.77□□□□□ -0.21
SHANK1-202ENST00000359082 UQCRQO14949 82 aa13.77□□□□□ -0.21
SHANK1-202ENST00000359082 XAGE1AQ9HD64 81 aa13.77□□□□□ -0.21
SHANK1-202ENST00000359082 CFAP126Q5VTH2 177 aa13.76□□□□□ -0.21
SHANK1-202ENST00000359082 SPRY4Q9C004 299 aa13.76□□□□□ -0.21
SHANK1-202ENST00000359082 NACAE9PAV3 2078 aa13.76□□□□□ -0.21
SHANK1-202ENST00000359082 IGLV4-3A0A075B6K6 122 aa13.75□□□□□ -0.21
SHANK1-202ENST00000359082 LMO4P61968 165 aa13.75□□□□□ -0.21
SHANK1-202ENST00000359082 TP73-AS1Q9UF72 201 aa13.75□□□□□ -0.21
SHANK1-202ENST00000359082 SPTAN1Q13813 2472 aaKnown RBP13.75□□□□□ -0.21
SHANK1-202ENST00000359082 C1orf229Q6ZS94 237 aaPredicted RBP13.75□□□□□ -0.21
SHANK1-202ENST00000359082 SMIM9A6NGZ8 99 aa13.74□□□□□ -0.21
SHANK1-202ENST00000359082 FBXL19-AS1Q494R0 122 aa13.74□□□□□ -0.21
SHANK1-202ENST00000359082 ADAMTS9Q9P2N4 1935 aa13.74□□□□□ -0.21
SHANK1-202ENST00000359082 FAM236DA0A1B0GTK5 79 aa13.74□□□□□ -0.21
SHANK1-202ENST00000359082 FAM236CP0DP71 79 aa13.74□□□□□ -0.21
SHANK1-202ENST00000359082 ZNF22P17026 224 aaPredicted RBP13.74□□□□□ -0.21
SHANK1-202ENST00000359082 K7EQG2 157 aa13.74□□□□□ -0.21
SHANK1-202ENST00000359082 C3orf84H3BNL1 204 aa13.73□□□□□ -0.21
SHANK1-202ENST00000359082 LINC00308Q8TCZ7 52 aa13.73□□□□□ -0.21
SHANK1-202ENST00000359082 SPANXB1Q9NS25 103 aaPredicted RBP13.73□□□□□ -0.21
SHANK1-202ENST00000359082 PPDPFQ9H3Y8 114 aa13.73□□□□□ -0.21
SHANK1-202ENST00000359082 C1orf158Q8N1D5 194 aa13.73□□□□□ -0.21
SHANK1-202ENST00000359082 IGKV2-28A0A075B6P5 120 aa13.73□□□□□ -0.21
SHANK1-202ENST00000359082 IGKV2D-28P01615 120 aa13.73□□□□□ -0.21
SHANK1-202ENST00000359082 LRRC75A-AS1Q8N1F1 130 aa13.72□□□□□ -0.21
SHANK1-202ENST00000359082 PRORYQ9H606 182 aa13.72□□□□□ -0.21
SHANK1-202ENST00000359082 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.72□□□□□ -0.21
SHANK1-202ENST00000359082 TRBV6-8A0A0A6YYG3 113 aa13.72□□□□□ -0.21
SHANK1-202ENST00000359082 ZNF106Q9H2Y7 1883 aaKnown RBP13.72□□□□□ -0.21
SHANK1-202ENST00000359082 TRIAP1O43715 76 aa13.71□□□□□ -0.21
SHANK1-202ENST00000359082 MRPL55Q7Z7F7 128 aaKnown RBP13.71□□□□□ -0.21
SHANK1-202ENST00000359082 IGLV2-18A0A075B6J9 118 aa13.71□□□□□ -0.21
SHANK1-202ENST00000359082 P0C879 139 aa13.71□□□□□ -0.21
SHANK1-202ENST00000359082 C10orf99Q6UWK7 81 aa13.71□□□□□ -0.21
SHANK1-202ENST00000359082 DENND4AQ7Z401 1863 aa13.71□□□□□ -0.21
SHANK1-202ENST00000359082 TMEM131Q92545 1883 aa13.71□□□□□ -0.21
SHANK1-202ENST00000359082 M0R2N4 97 aa13.71□□□□□ -0.22
SHANK1-202ENST00000359082 MAPKAPK5-AS1Q8N8E1 139 aa13.7□□□□□ -0.22
SHANK1-202ENST00000359082 IBA57-AS1B1ANH7 110 aa13.7□□□□□ -0.22
SHANK1-202ENST00000359082 UBE2D1P51668 147 aa13.7□□□□□ -0.22
SHANK1-202ENST00000359082 SPINK6Q6UWN8 80 aa13.7□□□□□ -0.22
SHANK1-202ENST00000359082 LTBP2Q14767 1821 aa13.69□□□□□ -0.22
SHANK1-202ENST00000359082 K7ERS5 55 aa13.69□□□□□ -0.22
SHANK1-202ENST00000359082 A0A0U1RQV1 116 aa13.69□□□□□ -0.22
SHANK1-202ENST00000359082 BRWD1-AS2P59051 145 aa13.69□□□□□ -0.22
SHANK1-202ENST00000359082 A8MZ25 164 aa13.69□□□□□ -0.22
SHANK1-202ENST00000359082 BBC3Q96PG8 261 aaPredicted RBP13.69□□□□□ -0.22
SHANK1-202ENST00000359082 C7orf33Q8WU49 177 aa13.68□□□□□ -0.22
SHANK1-202ENST00000359082 C2orf16Q68DN1 1984 aa13.68□□□□□ -0.22
SHANK1-202ENST00000359082 CCKP06307 115 aa13.68□□□□□ -0.22
SHANK1-202ENST00000359082 LINC00526Q96FQ7 95 aa13.68□□□□□ -0.22
SHANK1-202ENST00000359082 M0QY20 66 aa13.68□□□□□ -0.22
SHANK1-202ENST00000359082 Q8N976 141 aa13.67□□□□□ -0.22
SHANK1-202ENST00000359082 C6orf99Q4VX62 202 aa13.67□□□□□ -0.22
SHANK1-202ENST00000359082 FAM240AA0A1B0GVK7 77 aa13.67□□□□□ -0.22
SHANK1-202ENST00000359082 NDUFC2-KCTD14E9PQ53 114 aa13.67□□□□□ -0.22
SHANK1-202ENST00000359082 SYCNQ0VAF6 134 aa13.66□□□□□ -0.22
SHANK1-202ENST00000359082 GPR179Q6PRD1 2367 aa13.66□□□□□ -0.22
SHANK1-202ENST00000359082 CRIP1P50238 77 aa13.66□□□□□ -0.22
SHANK1-202ENST00000359082 MIFP14174 115 aa13.66□□□□□ -0.22
SHANK1-202ENST00000359082 PRR15LQ9BU68 103 aa13.66□□□□□ -0.22
SHANK1-202ENST00000359082 MALRD1Q5VYJ5 2156 aa13.66□□□□□ -0.22
SHANK1-202ENST00000359082 RNF185Q96GF1 192 aa13.66□□□□□ -0.22
SHANK1-202ENST00000359082 Q6ZSV7 163 aa13.65□□□□□ -0.22
SHANK1-202ENST00000359082 SHANK1Q9Y566 2161 aa13.65□□□□□ -0.22
SHANK1-202ENST00000359082 SNURFQ9Y675 71 aa13.65□□□□□ -0.22
SHANK1-202ENST00000359082 Q6ZPA2 131 aa13.65□□□□□ -0.22
SHANK1-202ENST00000359082 COL4A3Q01955 1670 aa13.64□□□□□ -0.23
SHANK1-202ENST00000359082 LOC100131303A0A0U1RQF7 123 aa13.64□□□□□ -0.23
SHANK1-202ENST00000359082 WFDC13Q8IUB5 93 aa13.64□□□□□ -0.23
SHANK1-202ENST00000359082 ZFAND3Q9H8U3 227 aa13.64□□□□□ -0.23
SHANK1-202ENST00000359082 RPL37AP8A6NKH3 93 aa13.64□□□□□ -0.23
SHANK1-202ENST00000359082 ATP5EP2Q5VTU8 51 aa13.64□□□□□ -0.23
SHANK1-202ENST00000359082 LINC00574Q9H8X3 128 aa13.64□□□□□ -0.23
SHANK1-202ENST00000359082 TRBV6-4A0A1B0GX49 114 aa13.63□□□□□ -0.23
SHANK1-202ENST00000359082 LY6LH3BQJ8 138 aa13.63□□□□□ -0.23
SHANK1-202ENST00000359082 C22orf34Q6ZV56 151 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms