RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TMEM223A0PJW6 202 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 PRAC2D3DTV9 90 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 TNFRSF13BO14836 293 aaPredicted RBP7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 ZMAT4Q9H898 229 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 Q6Q795 121 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 SETD2Q9BYW2 2564 aaPredicted RBP7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 M0QXV9 152 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 NXPH4O95158 308 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 COX8CQ7Z4L0 72 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 NFE4Q86UQ8 179 aa7.81□□□□□ -1.16
CCDC88A-202ENST00000336838 RNASE13Q5GAN3 156 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 HHLA3Q9XRX5 114 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 PROP1O75360 226 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 LINC00322Q6ZN03 302 aaPredicted RBP7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 C2orf91Q6ZV80 131 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 ABCA2Q9BZC7 2435 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 CFHR3Q02985 330 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 MRGPRG-AS1Q2M3A8 158 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 ABCA12Q86UK0 2595 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 DAND5Q8N907 189 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 ZFAND3Q9H8U3 227 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 A0A0J9YY99 117 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 MRPS36P82909 103 aaKnown RBP7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 NREPQ16612 68 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 DIRC1Q969H9 104 aa7.8□□□□□ -1.16
CCDC88A-202ENST00000336838 HIGD2BQ4VC39 106 aa7.79□□□□□ -1.16
CCDC88A-202ENST00000336838 A6NDX4 124 aa7.79□□□□□ -1.16
CCDC88A-202ENST00000336838 ETDCA0A1B0GVM5 59 aa7.79□□□□□ -1.16
CCDC88A-202ENST00000336838 MUC4Q99102 2169 aa7.79□□□□□ -1.16
CCDC88A-202ENST00000336838 NRACQ8N912 160 aa7.79□□□□□ -1.16
CCDC88A-202ENST00000336838 DEFB113Q30KQ7 82 aa7.79□□□□□ -1.16
CCDC88A-202ENST00000336838 COX17Q14061 63 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 NDUFB1O75438 58 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 IGHV4-61A0A0C4DH41 118 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 RNF183Q96D59 192 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 RNF185Q96GF1 192 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 CAMK2N2Q96S95 79 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 UFSP1Q6NVU6 142 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 C3orf56Q8N813 242 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 FRMD6-AS1P0C7T7 363 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 C3orf22Q8N5N4 141 aa7.78□□□□□ -1.16
CCDC88A-202ENST00000336838 M0QY20 66 aa7.77□□□□□ -1.16
CCDC88A-202ENST00000336838 IGHV3-30P01768 117 aa7.77□□□□□ -1.16
CCDC88A-202ENST00000336838 IGHV3-30-5P0DP03 117 aa7.77□□□□□ -1.16
CCDC88A-202ENST00000336838 IGHV4-38-2P0DP08 117 aa7.77□□□□□ -1.16
CCDC88A-202ENST00000336838 LECT2O14960 151 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 ZFP36P26651 326 aaKnown RBP7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 CEP295Q9C0D2 2601 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 USP9YO00507 2555 aaPredicted RBP7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 ZNF80P51504 273 aaPredicted RBP7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 CFAP126Q5VTH2 177 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 SLURP1P55000 103 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 ZFAND2AQ8N6M9 145 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 FN1P02751 2386 aaKnown RBP7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 LYRM9A8MSI8 78 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 CLUHP3Q96NS8 147 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 ADORA2A-AS1P86434 159 aa7.77□□□□□ -1.17
CCDC88A-202ENST00000336838 K7EQG2 157 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 TEX49A0A1B0GTD5 131 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 BRI3O95415 125 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 IGHV3-33P01772 117 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 PRO0255Q9UI72 69 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 MIR7-3HGQ8N6C7 128 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 CLEC2BQ92478 149 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 LOXL1Q08397 574 aaPredicted RBP7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 ZNF580Q9UK33 172 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 BLCAPP62952 87 aa7.76□□□□□ -1.17
CCDC88A-202ENST00000336838 KLLNB2CW77 178 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 MSMPQ1L6U9 139 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 LRRC75A-AS1Q8N1F1 130 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 IGLV4-3A0A075B6K6 122 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 C14orf177Q52M58 125 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 Q8N6K4 173 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 SPTBN4Q9H254 2564 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 ZNF22P17026 224 aaPredicted RBP7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 C5orf38Q86SI9 138 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 MRAPQ8TCY5 172 aa7.75□□□□□ -1.17
CCDC88A-202ENST00000336838 TRBV12-3P01733 135 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 UNQ9165/PRO28630Q6UXU0 137 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 LINC00308Q8TCZ7 52 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 LST1O00453 97 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 COX7BP24311 80 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 CRIP1P50238 77 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 V9GYY9 64 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 MAP6D1Q9H9H5 199 aa7.74□□□□□ -1.17
CCDC88A-202ENST00000336838 SPAG11BQ08648 103 aa7.73□□□□□ -1.17
CCDC88A-202ENST00000336838 UPK3BQ9BT76 320 aa7.73□□□□□ -1.17
CCDC88A-202ENST00000336838 IGHV4-30-2A0A087WSY4 118 aa7.73□□□□□ -1.17
CCDC88A-202ENST00000336838 A0A1W2PNU3 283 aaPredicted RBP7.73□□□□□ -1.17
CCDC88A-202ENST00000336838 NDUFA7O95182 113 aa7.73□□□□□ -1.17
CCDC88A-202ENST00000336838 TRBV6-4A0A1B0GX49 114 aa7.73□□□□□ -1.17
CCDC88A-202ENST00000336838 TRIAP1O43715 76 aa7.73□□□□□ -1.17
CCDC88A-202ENST00000336838 MT-ATP8P03928 68 aa7.72□□□□□ -1.17
CCDC88A-202ENST00000336838 IGKV2D-24A0A075B6R9 120 aa7.72□□□□□ -1.17
CCDC88A-202ENST00000336838 GRNP28799 593 aaKnown RBP7.72□□□□□ -1.17
CCDC88A-202ENST00000336838 LMO4P61968 165 aa7.72□□□□□ -1.17
CCDC88A-202ENST00000336838 TTTY13Q9BZ97 58 aa7.72□□□□□ -1.17
CCDC88A-202ENST00000336838 CCL18P55774 89 aa7.72□□□□□ -1.17
CCDC88A-202ENST00000336838 APRG1Q8IVJ8 170 aa7.72□□□□□ -1.17
CCDC88A-202ENST00000336838 SERP2Q8N6R1 65 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms