RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 DNAJC30Q96LL9 226 aa10.25□□□□□ -0.77
SYNE3-201ENST00000334258 EIF4EBP3O60516 100 aaPredicted RBP10.24□□□□□ -0.77
SYNE3-201ENST00000334258 NPC2P61916 151 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 ZNF580Q9UK33 172 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 A0A0B4J2C4 111 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 TMEM223A0PJW6 202 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 FAM223BA6NKX1 122 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 FAM223AQ8IWN6 122 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 H3BMM0 161 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 NPFFO15130 113 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 UBE2WQ96B02 151 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 LINC01587Q99440 93 aa10.24□□□□□ -0.77
SYNE3-201ENST00000334258 TRBV27A0A0K0K1C4 114 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 NDUFA4O00483 81 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 SOCS3O14543 225 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 TMEM126AQ9H061 195 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 M0R2P5 195 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 P0DMU3 169 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 FAM231AP0DMU4 169 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 FAM231CP0DMU5 169 aa10.23□□□□□ -0.77
SYNE3-201ENST00000334258 PRRC2AP48634 2157 aaKnown RBP10.23□□□□□ -0.77
SYNE3-201ENST00000334258 TRIAP1O43715 76 aa10.22□□□□□ -0.77
SYNE3-201ENST00000334258 ZNF22P17026 224 aaPredicted RBP10.22□□□□□ -0.77
SYNE3-201ENST00000334258 C11orf71Q6IPW1 123 aa10.22□□□□□ -0.77
SYNE3-201ENST00000334258 UBR5O95071 2799 aaPredicted RBP10.22□□□□□ -0.77
SYNE3-201ENST00000334258 LY6EQ16553 131 aa10.22□□□□□ -0.77
SYNE3-201ENST00000334258 TRAV12-2A0A075B6T6 113 aa10.22□□□□□ -0.77
SYNE3-201ENST00000334258 TRBV10-2A0A0K0K1G8 114 aa10.22□□□□□ -0.77
SYNE3-201ENST00000334258 COX6CP09669 75 aa10.22□□□□□ -0.77
SYNE3-201ENST00000334258 MOB4Q9Y3A3 225 aa10.22□□□□□ -0.77
SYNE3-201ENST00000334258 MDFICQ9P1T7 246 aa10.21□□□□□ -0.77
SYNE3-201ENST00000334258 A0A0J9YXY3 114 aa10.21□□□□□ -0.78
SYNE3-201ENST00000334258 F5H768 121 aa10.21□□□□□ -0.78
SYNE3-201ENST00000334258 NXPH4O95158 308 aa10.21□□□□□ -0.78
SYNE3-201ENST00000334258 HIST2H2BCQ6DN03 193 aa10.21□□□□□ -0.78
SYNE3-201ENST00000334258 KLK9Q2XQG4 91 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 BRD3OSQ6XYD6 125 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 POM121L12Q8N7R1 296 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 TIMM21Q9BVV7 248 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 KLK9Q9UKQ9 250 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 FAM19A4Q96LR4 140 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 TRAV8-3A0A0A6YYJ7 113 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 HTN1P15515 57 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 RNASE13Q5GAN3 156 aaKnown RBP10.2□□□□□ -0.78
SYNE3-201ENST00000334258 ODF3Q96PU9 254 aa10.2□□□□□ -0.78
SYNE3-201ENST00000334258 IGHV1-69P01742 117 aa10.19□□□□□ -0.78
SYNE3-201ENST00000334258 IGHV3-30-3P0DP02 117 aa10.19□□□□□ -0.78
SYNE3-201ENST00000334258 C20orf203Q8NBC4 194 aa10.19□□□□□ -0.78
SYNE3-201ENST00000334258 M0QY20 66 aa10.19□□□□□ -0.78
SYNE3-201ENST00000334258 LGALS9O00182 355 aa10.19□□□□□ -0.78
SYNE3-201ENST00000334258 CD28P10747 220 aa10.19□□□□□ -0.78
SYNE3-201ENST00000334258 RHOHQ15669 191 aa10.19□□□□□ -0.78
SYNE3-201ENST00000334258 KLLNB2CW77 178 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 WIPF1O43516 503 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 DUX3Q96PT4 197 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 FLNAP21333 2647 aaKnown RBP10.18□□□□□ -0.78
SYNE3-201ENST00000334258 IGHV3-73A0A0B4J1V6 119 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 TRBV6-5A0A0K0K1A5 114 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 C9orf153Q5TBE3 101 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 CLEC2BQ92478 149 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 PIMREGQ9BSJ6 248 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 ICOSQ9Y6W8 199 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 GCN1Q92616 2671 aaKnown RBP10.18□□□□□ -0.78
SYNE3-201ENST00000334258 TRBV30A0A0K0K1B3 111 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 I3L3M4 83 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 Q6ZSV7 163 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 APRG1Q8IVJ8 170 aa10.18□□□□□ -0.78
SYNE3-201ENST00000334258 DAZ1Q9NQZ3 744 aaKnown RBP10.18□□□□□ -0.78
SYNE3-201ENST00000334258 IGLV4-3A0A075B6K6 122 aa10.17□□□□□ -0.78
SYNE3-201ENST00000334258 TMEM101Q96IK0 257 aa10.17□□□□□ -0.78
SYNE3-201ENST00000334258 ITPR3Q14573 2671 aa10.17□□□□□ -0.78
SYNE3-201ENST00000334258 EDN2P20800 178 aa10.17□□□□□ -0.78
SYNE3-201ENST00000334258 NSUN5P1Q3KNT7 163 aa10.17□□□□□ -0.78
SYNE3-201ENST00000334258 CEMP1Q6PRD7 247 aaPredicted RBP10.17□□□□□ -0.78
SYNE3-201ENST00000334258 NDUFA12Q9UI09 145 aa10.17□□□□□ -0.78
SYNE3-201ENST00000334258 RPL13AP40429 203 aaKnown RBP10.17□□□□□ -0.78
SYNE3-201ENST00000334258 HERVK_113P63121 156 aa10.17□□□□□ -0.78
SYNE3-201ENST00000334258 CITED2Q99967 270 aaPredicted RBP10.17□□□□□ -0.78
SYNE3-201ENST00000334258 H7C423 109 aa10.16□□□□□ -0.78
SYNE3-201ENST00000334258 CCL19Q99731 98 aa10.16□□□□□ -0.78
SYNE3-201ENST00000334258 NOTCH3Q9UM47 2321 aa10.15□□□□□ -0.78
SYNE3-201ENST00000334258 IGHV3-16A0A0C4DH30 117 aa10.15□□□□□ -0.78
SYNE3-201ENST00000334258 A8MZ25 164 aa10.15□□□□□ -0.78
SYNE3-201ENST00000334258 J3KT08 172 aa10.15□□□□□ -0.78
SYNE3-201ENST00000334258 ADAMTSL4-AS1Q5T5F5 129 aa10.15□□□□□ -0.78
SYNE3-201ENST00000334258 USMG5Q96IX5 58 aa10.15□□□□□ -0.78
SYNE3-201ENST00000334258 SPINK13Q1W4C9 94 aa10.15□□□□□ -0.78
SYNE3-201ENST00000334258 IGHV4-61A0A0C4DH41 118 aa10.15□□□□□ -0.79
SYNE3-201ENST00000334258 Q6Q795 121 aa10.14□□□□□ -0.79
SYNE3-201ENST00000334258 WNK1Q9H4A3 2382 aa10.14□□□□□ -0.79
SYNE3-201ENST00000334258 FLNBO75369 2602 aaKnown RBP10.14□□□□□ -0.79
SYNE3-201ENST00000334258 DAND5Q8N907 189 aa10.14□□□□□ -0.79
SYNE3-201ENST00000334258 OR13C6PQ8NH95 151 aa10.13□□□□□ -0.79
SYNE3-201ENST00000334258 IGHV4-30-2A0A087WSY4 118 aa10.13□□□□□ -0.79
SYNE3-201ENST00000334258 KRTAP10-9P60411 292 aa10.13□□□□□ -0.79
SYNE3-201ENST00000334258 BLCAPP62952 87 aa10.13□□□□□ -0.79
SYNE3-201ENST00000334258 A0A0J9YX75 114 aa10.13□□□□□ -0.79
SYNE3-201ENST00000334258 LMO4P61968 165 aa10.13□□□□□ -0.79
SYNE3-201ENST00000334258 IGHV1OR15-1A0A075B7D0 117 aa10.12□□□□□ -0.79
SYNE3-201ENST00000334258 NDUFA7O95182 113 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms