RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 PROK1P58294 105 aa12.67□□□□□ -0.38
DDX28-201ENST00000332395 PTH2Q96A98 100 aa12.67□□□□□ -0.38
DDX28-201ENST00000332395 ZNF418Q8TF45 676 aaPredicted RBP12.66□□□□□ -0.38
DDX28-201ENST00000332395 XCL2Q9UBD3 114 aa12.66□□□□□ -0.38
DDX28-201ENST00000332395 MTORP42345 2549 aa12.66□□□□□ -0.38
DDX28-201ENST00000332395 C11orf86A6NJI1 115 aa12.66□□□□□ -0.38
DDX28-201ENST00000332395 SH2D6Q7Z4S9 175 aa12.66□□□□□ -0.38
DDX28-201ENST00000332395 PRO0461Q9UI25 63 aa12.66□□□□□ -0.38
DDX28-201ENST00000332395 TRBV7-3A0A075B6L6 115 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 EMP1P54849 157 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 HILS1P60008 231 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 RRN3P1Q2M238 152 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 ETDBQ3ZM63 59 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 PAPPA-AS1Q5QFB9 102 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 C20orf203Q8NBC4 194 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 PRADC1Q9BSG0 188 aa12.65□□□□□ -0.38
DDX28-201ENST00000332395 A0A1B0GWB2 263 aa12.64□□□□□ -0.39
DDX28-201ENST00000332395 GAGE13Q4V321 117 aa12.64□□□□□ -0.39
DDX28-201ENST00000332395 CFAP126Q5VTH2 177 aa12.64□□□□□ -0.39
DDX28-201ENST00000332395 HIST1H4GQ99525 98 aa12.64□□□□□ -0.39
DDX28-201ENST00000332395 SPXQ9BT56 116 aa12.64□□□□□ -0.39
DDX28-201ENST00000332395 NACAE9PAV3 2078 aa12.64□□□□□ -0.39
DDX28-201ENST00000332395 MYMXA0A1B0GTQ4 84 aa12.64□□□□□ -0.39
DDX28-201ENST00000332395 A0A1B0GV72 72 aa12.63□□□□□ -0.39
DDX28-201ENST00000332395 MRPL16Q9NX20 251 aaKnown RBP12.63□□□□□ -0.39
DDX28-201ENST00000332395 SETD2Q9BYW2 2564 aaPredicted RBP12.63□□□□□ -0.39
DDX28-201ENST00000332395 BEAN1Q3B7T3 259 aa12.62□□□□□ -0.39
DDX28-201ENST00000332395 Q6ZSN1 163 aa12.62□□□□□ -0.39
DDX28-201ENST00000332395 OPRPNQ99935 248 aaPredicted RBP12.62□□□□□ -0.39
DDX28-201ENST00000332395 SMR3AQ99954 134 aa12.62□□□□□ -0.39
DDX28-201ENST00000332395 TNFRSF18Q9Y5U5 241 aa12.62□□□□□ -0.39
DDX28-201ENST00000332395 C1orf158Q8N1D5 194 aa12.62□□□□□ -0.39
DDX28-201ENST00000332395 IGHV3OR16-12A0A075B7B8 117 aa12.61□□□□□ -0.39
DDX28-201ENST00000332395 RHODO00212 210 aa12.61□□□□□ -0.39
DDX28-201ENST00000332395 ZNRF2Q8NHG8 242 aa12.61□□□□□ -0.39
DDX28-201ENST00000332395 HERVK_113P61574 105 aa12.6□□□□□ -0.39
DDX28-201ENST00000332395 Q9UF83 564 aa12.6□□□□□ -0.39
DDX28-201ENST00000332395 FASNP49327 2511 aaKnown RBP12.6□□□□□ -0.39
DDX28-201ENST00000332395 ADARB2-AS1A8MUL3 147 aa12.6□□□□□ -0.39
DDX28-201ENST00000332395 ZNF815PA8K554 130 aa12.59□□□□□ -0.39
DDX28-201ENST00000332395 NDUFA7O95182 113 aa12.59□□□□□ -0.39
DDX28-201ENST00000332395 RS1O15537 224 aa12.59□□□□□ -0.39
DDX28-201ENST00000332395 IGHV3-53P01767 116 aa12.59□□□□□ -0.39
DDX28-201ENST00000332395 INSL3P51460 131 aa12.59□□□□□ -0.39
DDX28-201ENST00000332395 TMEM170BQ5T4T1 132 aa12.59□□□□□ -0.39
DDX28-201ENST00000332395 MTURNQ8N3F0 131 aa12.59□□□□□ -0.39
DDX28-201ENST00000332395 IGLV4-3A0A075B6K6 122 aa12.58□□□□□ -0.4
DDX28-201ENST00000332395 IGLV1-51P01701 117 aa12.58□□□□□ -0.4
DDX28-201ENST00000332395 CFAP161Q6P656 301 aa12.58□□□□□ -0.4
DDX28-201ENST00000332395 NIPBLQ6KC79 2804 aaeCLIP12.58□□□□□ -0.4
DDX28-201ENST00000332395 NFE4Q86UQ8 179 aa12.57□□□□□ -0.4
DDX28-201ENST00000332395 IL17DQ8TAD2 202 aa12.57□□□□□ -0.4
DDX28-201ENST00000332395 CMC4P56277 68 aaPredicted RBP12.57□□□□□ -0.4
DDX28-201ENST00000332395 GCN1Q92616 2671 aaKnown RBP12.56□□□□□ -0.4
DDX28-201ENST00000332395 PYGO1Q9Y3Y4 419 aa12.56□□□□□ -0.4
DDX28-201ENST00000332395 VCX2Q9H322 139 aa12.56□□□□□ -0.4
DDX28-201ENST00000332395 CKS1BP61024 79 aa12.55□□□□□ -0.4
DDX28-201ENST00000332395 SCGB1D4Q6XE38 83 aa12.55□□□□□ -0.4
DDX28-201ENST00000332395 ATP6V0E2Q8NHE4 81 aa12.55□□□□□ -0.4
DDX28-201ENST00000332395 DNAJC30Q96LL9 226 aa12.55□□□□□ -0.4
DDX28-201ENST00000332395 WFDC10AQ9H1F0 79 aa12.55□□□□□ -0.4
DDX28-201ENST00000332395 SETXQ7Z333 2677 aaKnown RBP12.55□□□□□ -0.4
DDX28-201ENST00000332395 APOMO95445 188 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 PLEKHB2Q96CS7 222 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 FAM110AQ9BQ89 295 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 HIVEP2P31629 2446 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 TRGV1A0A0A0MS02 117 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 FOXI1Q12951 378 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 C1QTNF4Q9BXJ3 329 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 PGPEP1Q9NXJ5 209 aa12.54□□□□□ -0.4
DDX28-201ENST00000332395 GIG44P09565 113 aaPredicted RBP12.53□□□□□ -0.4
DDX28-201ENST00000332395 TSPEAR-AS2P59090 65 aa12.53□□□□□ -0.4
DDX28-201ENST00000332395 TMEM263Q8WUH6 116 aaKnown RBP12.53□□□□□ -0.4
DDX28-201ENST00000332395 FAM104AQ969W3 186 aa12.53□□□□□ -0.4
DDX28-201ENST00000332395 CHCHD7Q9BUK0 85 aa12.53□□□□□ -0.4
DDX28-201ENST00000332395 C19orf73Q9NVV2 129 aa12.53□□□□□ -0.4
DDX28-201ENST00000332395 LY6G6DO95868 133 aa12.53□□□□□ -0.4
DDX28-201ENST00000332395 SMCPP49901 116 aaPredicted RBP12.53□□□□□ -0.4
DDX28-201ENST00000332395 CEMP1Q6PRD7 247 aaPredicted RBP12.52□□□□□ -0.4
DDX28-201ENST00000332395 AMELXQ99217 191 aa12.52□□□□□ -0.4
DDX28-201ENST00000332395 IGHV3-38A0A0C4DH36 116 aa12.52□□□□□ -0.41
DDX28-201ENST00000332395 A0A0J9YXV3 536 aa12.52□□□□□ -0.41
DDX28-201ENST00000332395 TMEM223A0PJW6 202 aa12.51□□□□□ -0.41
DDX28-201ENST00000332395 ZNF22P17026 224 aaPredicted RBP12.51□□□□□ -0.41
DDX28-201ENST00000332395 Q6ZTI0 123 aa12.51□□□□□ -0.41
DDX28-201ENST00000332395 HECTD1Q9ULT8 2610 aa12.51□□□□□ -0.41
DDX28-201ENST00000332395 J3QQQ9 107 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 RPL35AP18077 110 aaKnown RBP12.5□□□□□ -0.41
DDX28-201ENST00000332395 UBE2D1P51668 147 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 CRYBA4P53673 196 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 KRTAP10-3P60369 221 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 CDIP1Q9H305 208 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 SPANXA1Q9NS26 97 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 UBE2D4Q9Y2X8 147 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 JMJD1CQ15652 2540 aa12.5□□□□□ -0.41
DDX28-201ENST00000332395 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.49□□□□□ -0.41
DDX28-201ENST00000332395 A0A0J9YY99 117 aa12.49□□□□□ -0.41
DDX28-201ENST00000332395 IGKV2-29A2NJV5 120 aaPredicted RBP12.49□□□□□ -0.41
DDX28-201ENST00000332395 NDUFA11Q86Y39 141 aa12.49□□□□□ -0.41
DDX28-201ENST00000332395 LGALS3P17931 250 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms