RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 HMGN2P05204 90 aaKnown RBP2.33□□□□□ -2.04
CCDC54-201ENST00000261058 NDUFA11Q86Y39 141 aa2.33□□□□□ -2.04
CCDC54-201ENST00000261058 FAM223AQ8IWN6 122 aa2.33□□□□□ -2.04
CCDC54-201ENST00000261058 TMEM105Q8N8V8 129 aa2.33□□□□□ -2.04
CCDC54-201ENST00000261058 U3KQK5 164 aa2.33□□□□□ -2.04
CCDC54-201ENST00000261058 THADAQ6YHU6 1953 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 FMN2Q9NZ56 1722 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 ADGRB2O60241 1585 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 TRBV7-3A0A075B6L6 115 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 TRAV7A0A075B6U4 112 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 LOC107984156A0A0G2JMH3 177 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 CEBPZOSA8MTT3 80 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 IGLV7-43P04211 117 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 IFI27P40305 119 aaPredicted RBP2.32□□□□□ -2.04
CCDC54-201ENST00000261058 CAV3P56539 151 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 ATXN8Q156A1 80 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 PRR9Q5T870 116 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 ZCCHC23Q6ZST2 131 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 ARL17AQ8IVW1 177 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 FAM19A2Q8N3H0 131 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 Q8NDZ9 215 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 RETNLBQ9BQ08 111 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 TXNDC17Q9BRA2 123 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 PRO1854Q9UHT4 67 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 E9PCH4 1651 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 C5P01031 1676 aa2.32□□□□□ -2.04
CCDC54-201ENST00000261058 NUMA1Q14980 2115 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 STRCP1A6NGW2 1772 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 PLXNA1Q9UIW2 1896 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 IGKV1D-37A0A075B6S9 117 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 hDV103S1A0JD37 113 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 H3BQ85 93 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 IGHV3-53P01767 116 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 ZNF117Q03924 483 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 PLGLAQ15195 96 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 ATP5EP2Q5VTU8 51 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 Q6JHZ5 121 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 C20orf197Q8N268 126 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 FAM167A-AS1Q96KT0 104 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 FAM215AQ9Y5M1 114 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 UBR1Q8IWV7 1749 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 ARFGEF1Q9Y6D6 1849 aa2.31□□□□□ -2.04
CCDC54-201ENST00000261058 LOC285556D6RIA3 1793 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 PLXNA3P51805 1871 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 TRBV25-1A0A075B6N4 114 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 IGHV3OR16-8A0A075B7F1 116 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 TMSB15BA0A087X1C1 80 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 TRBV10-3A0A0K0K1G6 114 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 TMEM30CPA0ZSE6 113 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 C16orf90A8MZG2 172 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 HCG22E2RYF7 251 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 H3BPC8 53 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 ERC2-IT1O76042 136 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 C9orf116Q5BN46 136 aaPredicted RBP2.3□□□□□ -2.04
CCDC54-201ENST00000261058 KLF14Q8TD94 323 aaPredicted RBP2.3□□□□□ -2.04
CCDC54-201ENST00000261058 CDC42SE1Q9NRR8 79 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 SHANK1Q9Y566 2161 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 ERCC6L2Q5T890 1561 aa2.3□□□□□ -2.04
CCDC54-201ENST00000261058 PHRF1Q9P1Y6 1649 aaKnown RBP2.3□□□□□ -2.04
CCDC54-201ENST00000261058 FAM208AQ9UK61 1670 aaKnown RBP2.3□□□□□ -2.04
CCDC54-201ENST00000261058 QSER1Q2KHR3 1735 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 TNS1Q9HBL0 1735 aaKnown RBP2.29□□□□□ -2.04
CCDC54-201ENST00000261058 COL14A1Q05707 1796 aaKnown RBP2.29□□□□□ -2.04
CCDC54-201ENST00000261058 SLX4Q8IY92 1834 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 IGLV3-32A0A0A0MS00 114 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 TEX49A0A1B0GTD5 131 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 FAM223BA6NKX1 122 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 C17orf98A8MV24 154 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 COX6CP09669 75 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 MIFP14174 115 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 UBE2D1P51668 147 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 SUPT4H1P63272 117 aaKnown RBP2.29□□□□□ -2.04
CCDC54-201ENST00000261058 ZNF826PQ6ZT77 177 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 CLECL1Q8IZS7 167 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 Q8N6K4 173 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 Q8N814 137 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 SPTSSBQ8NFR3 76 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 ZNF563Q8TA94 476 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 LIMD2Q9BT23 127 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 BPESC1Q9GZL8 116 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 WDR90Q96KV7 1748 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 LCTP09848 1927 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 KIAA2026Q5HYC2 2103 aa2.29□□□□□ -2.04
CCDC54-201ENST00000261058 TRAV22A0A0B4J277 110 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 F8WEM9 126 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 C3P01024 1663 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 PPYP01298 95 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 IGLV1-51P01701 117 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 RPL28P46779 137 aaKnown RBP2.28□□□□□ -2.04
CCDC54-201ENST00000261058 SERF2P84101 59 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 LYZL1Q6UWQ5 148 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 C2orf82Q6UX34 121 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 ZNF818PQ6ZRF7 136 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 SAMD9LQ8IVG5 1584 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 CPAMD8Q8IZJ3 1885 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 NINQ8N4C6 2090 aa2.28□□□□□ -2.04
CCDC54-201ENST00000261058 MALRD1Q5VYJ5 2156 aa2.28□□□□□ -2.05
CCDC54-201ENST00000261058 CD163L1Q9NR16 1453 aa2.27□□□□□ -2.05
CCDC54-201ENST00000261058 IGKV2D-26A0A0A0MRZ7 120 aa2.27□□□□□ -2.05
CCDC54-201ENST00000261058 LINC01549A6NIU2 74 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms