RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 SEC61GP60059 68 aa6.47□□□□□ -1.37
PTCD3-201ENST00000254630 CRIP1P50238 77 aa6.46□□□□□ -1.37
PTCD3-201ENST00000254630 UPK3BQ9BT76 320 aa6.46□□□□□ -1.37
PTCD3-201ENST00000254630 ADAMTS20P59510 1910 aa6.46□□□□□ -1.37
PTCD3-201ENST00000254630 IGKV4-1P06312 121 aa6.46□□□□□ -1.38
PTCD3-201ENST00000254630 LINC01006Q8NI28 216 aa6.46□□□□□ -1.38
PTCD3-201ENST00000254630 SPANXB1Q9NS25 103 aaPredicted RBP6.46□□□□□ -1.38
PTCD3-201ENST00000254630 MLST8Q9BVC4 326 aa6.46□□□□□ -1.38
PTCD3-201ENST00000254630 ZNF407Q9C0G0 2248 aa6.46□□□□□ -1.38
PTCD3-201ENST00000254630 UBE2D1P51668 147 aa6.45□□□□□ -1.38
PTCD3-201ENST00000254630 CPAMD8Q8IZJ3 1885 aa6.45□□□□□ -1.38
PTCD3-201ENST00000254630 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.45□□□□□ -1.38
PTCD3-201ENST00000254630 M0R2N4 97 aa6.45□□□□□ -1.38
PTCD3-201ENST00000254630 IGLV1-40P01703 118 aa6.45□□□□□ -1.38
PTCD3-201ENST00000254630 ZNF22P17026 224 aaPredicted RBP6.45□□□□□ -1.38
PTCD3-201ENST00000254630 IBA57-AS1B1ANH7 110 aa6.45□□□□□ -1.38
PTCD3-201ENST00000254630 IGLV2-18A0A075B6J9 118 aa6.45□□□□□ -1.38
PTCD3-201ENST00000254630 ALPK2Q86TB3 2170 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 ATG2AQ2TAZ0 1938 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 WFDC10AQ9H1F0 79 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 CLUHP3Q96NS8 147 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 CDKN2A-AS1Q9UH64 79 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 LOC100131303A0A0U1RQF7 123 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 TRAV23DV6A0A075B6W5 121 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 B5MCH6 92 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 SPATA12Q7Z6I5 190 aa6.44□□□□□ -1.38
PTCD3-201ENST00000254630 A0A0J9YWU9 116 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 BPY2O14599 106 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 NDUFA7O95182 113 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 TSHBP01222 138 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 ZNF706Q9Y5V0 76 aaPredicted RBP6.43□□□□□ -1.38
PTCD3-201ENST00000254630 KPRPQ5T749 579 aaPredicted RBP6.43□□□□□ -1.38
PTCD3-201ENST00000254630 Q6ZS46 218 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 ARHGAP21Q5T5U3 1957 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 LY6G6CO95867 125 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 IGLV2-11P01706 119 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 SLPIP03973 132 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 RAI1Q7Z5J4 1906 aaPredicted RBP6.43□□□□□ -1.38
PTCD3-201ENST00000254630 G3V4G9 280 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 SYCNQ0VAF6 134 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 DCANP1Q8TF63 244 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 LINC00308Q8TCZ7 52 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 LELP1Q5T871 98 aa6.43□□□□□ -1.38
PTCD3-201ENST00000254630 PRR9Q5T870 116 aa6.42□□□□□ -1.38
PTCD3-201ENST00000254630 NANOS2P60321 138 aaKnown RBP6.42□□□□□ -1.38
PTCD3-201ENST00000254630 LOC107984640A0A0U1RRK4 108 aa6.42□□□□□ -1.38
PTCD3-201ENST00000254630 PIK3CD-AS1Q5SR53 167 aa6.42□□□□□ -1.38
PTCD3-201ENST00000254630 MBD6Q96DN6 1003 aa6.42□□□□□ -1.38
PTCD3-201ENST00000254630 CDSNQ15517 529 aa6.42□□□□□ -1.38
PTCD3-201ENST00000254630 A0A096LNI7 61 aa6.41□□□□□ -1.38
PTCD3-201ENST00000254630 UBE2D4Q9Y2X8 147 aa6.41□□□□□ -1.38
PTCD3-201ENST00000254630 CASC2Q6XLA1 102 aa6.41□□□□□ -1.38
PTCD3-201ENST00000254630 C9orf85Q96MD7 179 aa6.41□□□□□ -1.38
PTCD3-201ENST00000254630 RNASE3P12724 160 aaKnown RBP6.41□□□□□ -1.38
PTCD3-201ENST00000254630 CD164L2Q6UWJ8 174 aa6.41□□□□□ -1.38
PTCD3-201ENST00000254630 PTH2Q96A98 100 aa6.41□□□□□ -1.38
PTCD3-201ENST00000254630 PYGO1Q9Y3Y4 419 aa6.41□□□□□ -1.38
PTCD3-201ENST00000254630 IGLV4-69A0A075B6H9 119 aa6.4□□□□□ -1.38
PTCD3-201ENST00000254630 NDUFC2O95298 119 aa6.4□□□□□ -1.38
PTCD3-201ENST00000254630 TRBV6-5A0A0K0K1A5 114 aa6.4□□□□□ -1.38
PTCD3-201ENST00000254630 SMR3AQ99954 134 aa6.4□□□□□ -1.38
PTCD3-201ENST00000254630 XAGE1AQ9HD64 81 aa6.4□□□□□ -1.38
PTCD3-201ENST00000254630 HRCT1Q6UXD1 115 aa6.4□□□□□ -1.39
PTCD3-201ENST00000254630 LINC00959A0A1B0GUT2 108 aa6.4□□□□□ -1.39
PTCD3-201ENST00000254630 NRACQ8N912 160 aa6.4□□□□□ -1.39
PTCD3-201ENST00000254630 IGKV2-28A0A075B6P5 120 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 M0R378 163 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 IGKV2D-28P01615 120 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 J3KT08 172 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 SCXQ7RTU7 201 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 LINC00643Q86TS7 51 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 KLLNB2CW77 178 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 DHRS4-AS1Q9P1J3 65 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 KIAA1549Q9HCM3 1950 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 RBX1P62877 108 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 MAPKAPK5-AS1Q8N8E1 139 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 TRBV27A0A0K0K1C4 114 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 WFDC10BQ8IUB3 73 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 Q8N976 141 aa6.39□□□□□ -1.39
PTCD3-201ENST00000254630 PLAC8L1A1L4L8 177 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 TRIAP1O43715 76 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 SDIM1Q6ZPB5 146 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 EDN2P20800 178 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 MRPS36P82909 103 aaKnown RBP6.38□□□□□ -1.39
PTCD3-201ENST00000254630 TIMM17BO60830 172 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 IGHV4-30-4P0DP06 118 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 BRWD1Q9NSI6 2320 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 TEX49A0A1B0GTD5 131 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 NUPR2A6NF83 97 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 PRM2P04554 102 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 CACNA1DQ01668 2161 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 COX17Q14061 63 aa6.38□□□□□ -1.39
PTCD3-201ENST00000254630 TRBV30A0A0K0K1B3 111 aa6.37□□□□□ -1.39
PTCD3-201ENST00000254630 RPL37AP8A6NKH3 93 aa6.37□□□□□ -1.39
PTCD3-201ENST00000254630 A8MZ25 164 aa6.37□□□□□ -1.39
PTCD3-201ENST00000254630 LINC00474Q9P2X8 69 aa6.37□□□□□ -1.39
PTCD3-201ENST00000254630 ENHOQ6UWT2 76 aa6.37□□□□□ -1.39
PTCD3-201ENST00000254630 C16orf95Q9H693 158 aa6.37□□□□□ -1.39
PTCD3-201ENST00000254630 PPDPFQ9H3Y8 114 aa6.37□□□□□ -1.39
PTCD3-201ENST00000254630 PCDH15Q96QU1 1955 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms