RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 TSHBP01222 138 aa3.46□□□□□ -1.86
VPS13C-201ENST00000249837 PRB1P04280 392 aa3.46□□□□□ -1.86
VPS13C-201ENST00000249837 CHD7Q9P2D1 2997 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 PROK1P58294 105 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 NFE4Q86UQ8 179 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 Q96MF0 132 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 MGAM2Q2M2H8 2515 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 NXPH4O95158 308 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 LAMTOR3Q9UHA4 124 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 IGKV3D-7A0A0C4DH55 119 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 TMEM61Q8N0U2 210 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 MAP1AP78559 2803 aaPredicted RBP3.45□□□□□ -1.86
VPS13C-201ENST00000249837 A8MZ25 164 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 UFSP1Q6NVU6 142 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 SLC25A29Q8N8R3 303 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 XCL1P47992 114 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 ATRQ13535 2644 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 SS18Q15532 418 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 ZNF292O60281 2723 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 A0A096LPF7 62 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 TRBV10-2A0A0K0K1G8 114 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 F5H768 121 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 OVOL2Q9BRP0 275 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 CCL24O00175 119 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 INAFM2P0DMQ5 153 aa3.45□□□□□ -1.86
VPS13C-201ENST00000249837 IGHV3-33P01772 117 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 DNAJC30Q96LL9 226 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 RNASE3P12724 160 aaKnown RBP3.44□□□□□ -1.86
VPS13C-201ENST00000249837 ZNF22P17026 224 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-201ENST00000249837 HERVK_113P63121 156 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 CFAP46Q8IYW2 2715 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 IGLV4-3A0A075B6K6 122 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 IGHV1-58A0A0C4DH39 117 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 IGHG4P01861 327 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 VPREB3Q9UKI3 123 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 TEX49A0A1B0GTD5 131 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 CDKN2A-AS1Q9UH64 79 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 CHD9Q3L8U1 2897 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 CRYGDP07320 174 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 SND1-IT1Q9HBX3 110 aa3.44□□□□□ -1.86
VPS13C-201ENST00000249837 J3QLI3 93 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 M0QY20 66 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 COX7B2Q8TF08 81 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 VSIG2Q96IQ7 327 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 CHD6Q8TD26 2715 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 TRAV13-2A0A0B4J235 113 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 POLR2KP53803 58 aaKnown RBP3.43□□□□□ -1.86
VPS13C-201ENST00000249837 ATP6V0E2Q8NHE4 81 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 ESM1Q9NQ30 184 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 CNFNQ9BYD5 112 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 RANBP2P49792 3224 aaKnown RBP3.43□□□□□ -1.86
VPS13C-201ENST00000249837 A0A1W2PPR1 153 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 MIAQ16674 131 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 ANGP03950 147 aaKnown RBP3.43□□□□□ -1.86
VPS13C-201ENST00000249837 TRAV4A0A0B4J268 109 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 C18orf65Q6ZTR6 163 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 SMIM20Q8N5G0 67 aa3.43□□□□□ -1.86
VPS13C-201ENST00000249837 GYPEP15421 78 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 TSPEAR-AS2P59090 65 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 TRIAP1O43715 76 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 TMEM223A0PJW6 202 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 LGALS9O00182 355 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 ZMAT4Q9H898 229 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 Q9HAA7 133 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 DAD1P61803 113 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 TRBV6-5A0A0K0K1A5 114 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 TRANK1O15050 2925 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 ITPR3Q14573 2671 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 A0A0B4J2C4 111 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 IGLV10-54A0A075B6I4 117 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 SOCS3O14543 225 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 CRLF1O75462 422 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 XGP55808 180 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 Q6ZTI0 123 aa3.42□□□□□ -1.86
VPS13C-201ENST00000249837 IGLV2-18A0A075B6J9 118 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 IGHV3-30P01768 117 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 IGHV3-30-5P0DP03 117 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 TMEM89A2RUT3 159 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 IGIPA6NJ69 53 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 PSMG3-AS1Q96PY0 264 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 IGHV4-4A0A075B6R2 117 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 ZNF580Q9UK33 172 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 TEP1Q99973 2627 aaKnown RBP3.41□□□□□ -1.86
VPS13C-201ENST00000249837 CFAP126Q5VTH2 177 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 CLUHP3Q96NS8 147 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 MAP6D1Q9H9H5 199 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 FAM236AA0A1B0GUQ0 79 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 FAM236BA0A1B0GV22 79 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 A0A0C4DFX4 3053 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 UBE2D1P51668 147 aa3.41□□□□□ -1.86
VPS13C-201ENST00000249837 NDUFV3P56181 108 aaKnown RBP3.41□□□□□ -1.86
VPS13C-201ENST00000249837 DEFB4AO15263 64 aa3.4□□□□□ -1.86
VPS13C-201ENST00000249837 ATP5G1P05496 136 aa3.4□□□□□ -1.86
VPS13C-201ENST00000249837 DAZ2Q13117 558 aaKnown RBP3.4□□□□□ -1.86
VPS13C-201ENST00000249837 DAZ4Q86SG3 579 aaKnown RBP3.4□□□□□ -1.86
VPS13C-201ENST00000249837 TMEM263Q8WUH6 116 aaKnown RBP3.4□□□□□ -1.86
VPS13C-201ENST00000249837 DAZ3Q9NR90 486 aaKnown RBP3.4□□□□□ -1.86
VPS13C-201ENST00000249837 MIR7-3HGQ8N6C7 128 aa3.4□□□□□ -1.86
VPS13C-201ENST00000249837 A0A1B0GX51 115 aa3.4□□□□□ -1.87
VPS13C-201ENST00000249837 H3BT86 120 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 266.2 ms