RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TMEM61Q8N0U2 210 aa12.01□□□□□ -0.49
HOXD3-201ENST00000249440 A0A0J9YXV3 536 aa12□□□□□ -0.49
HOXD3-201ENST00000249440 ZNF415Q09FC8 603 aa12□□□□□ -0.49
HOXD3-201ENST00000249440 C4orf3Q8WVX3 66 aa12□□□□□ -0.49
HOXD3-201ENST00000249440 SETXQ7Z333 2677 aaKnown RBP12□□□□□ -0.49
HOXD3-201ENST00000249440 OTOGQ6ZRI0 2925 aa12□□□□□ -0.49
HOXD3-201ENST00000249440 RBMY1BA6NDE4 496 aaKnown RBP12□□□□□ -0.49
HOXD3-201ENST00000249440 RBMY1EA6NEQ0 496 aaKnown RBP12□□□□□ -0.49
HOXD3-201ENST00000249440 RBMY1DP0C7P1 496 aaKnown RBP12□□□□□ -0.49
HOXD3-201ENST00000249440 CRYBA4P53673 196 aa12□□□□□ -0.49
HOXD3-201ENST00000249440 PROK1P58294 105 aa12□□□□□ -0.49
HOXD3-201ENST00000249440 MYO9AB2RTY4 2548 aa12□□□□□ -0.49
HOXD3-201ENST00000249440 CD28P10747 220 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 PSMB2P49721 201 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 CFAP126Q5VTH2 177 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 SFTA2Q6UW10 78 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 C10orf126Q8N4M7 172 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 NACAE9PAV3 2078 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 PTH2Q96A98 100 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 PRO1854Q9UHT4 67 aa11.99□□□□□ -0.49
HOXD3-201ENST00000249440 DEFB113Q30KQ7 82 aa11.98□□□□□ -0.49
HOXD3-201ENST00000249440 KHDC1LQ5JSQ8 128 aa11.98□□□□□ -0.49
HOXD3-201ENST00000249440 DYNLRB2Q8TF09 96 aa11.98□□□□□ -0.49
HOXD3-201ENST00000249440 IGHV3-64A0A075B6Q5 118 aa11.98□□□□□ -0.49
HOXD3-201ENST00000249440 MAP6D1Q9H9H5 199 aa11.98□□□□□ -0.49
HOXD3-201ENST00000249440 TRBV20-1A0A075B6N2 111 aa11.97□□□□□ -0.49
HOXD3-201ENST00000249440 PRM2P04554 102 aa11.97□□□□□ -0.49
HOXD3-201ENST00000249440 KRTAP1-3Q8IUG1 177 aa11.97□□□□□ -0.49
HOXD3-201ENST00000249440 LRRC75A-AS1Q8N1F1 130 aa11.97□□□□□ -0.49
HOXD3-201ENST00000249440 RAX2Q96IS3 184 aa11.97□□□□□ -0.49
HOXD3-201ENST00000249440 TSSC4Q9Y5U2 329 aaPredicted RBP11.97□□□□□ -0.49
HOXD3-201ENST00000249440 GAGE12HA6NDE8 117 aa11.97□□□□□ -0.49
HOXD3-201ENST00000249440 MRPS36P82909 103 aaKnown RBP11.97□□□□□ -0.49
HOXD3-201ENST00000249440 LINC01587Q99440 93 aa11.97□□□□□ -0.49
HOXD3-201ENST00000249440 TMEM238C9JI98 176 aa11.96□□□□□ -0.49
HOXD3-201ENST00000249440 SPXQ9BT56 116 aa11.96□□□□□ -0.49
HOXD3-201ENST00000249440 ATP6V0E2Q8NHE4 81 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 FAM104AQ969W3 186 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 SIGMAR1Q99720 223 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 LINC00467Q9BRT7 94 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 TIMM21Q9BVV7 248 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 BAHCC1Q9P281 2608 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 A4D1N5 150 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 DEFB114Q30KQ6 69 aa11.95□□□□□ -0.5
HOXD3-201ENST00000249440 IGHV3-30-3P0DP02 117 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 SONP18583 2426 aaKnown RBP11.94□□□□□ -0.5
HOXD3-201ENST00000249440 INSP01308 110 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 SMCPP49901 116 aaPredicted RBP11.94□□□□□ -0.5
HOXD3-201ENST00000249440 CEMP1Q6PRD7 247 aaPredicted RBP11.94□□□□□ -0.5
HOXD3-201ENST00000249440 Q6ZSN1 163 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 C11orf72Q8NBR9 251 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 DNAJC30Q96LL9 226 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 Q96MF0 132 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 SPATA25Q9BR10 227 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 C1QTNF4Q9BXJ3 329 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 SPANXA1Q9NS26 97 aa11.94□□□□□ -0.5
HOXD3-201ENST00000249440 TCL1BO95988 128 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 SCGB1C2P0DMR2 95 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 FOXI1Q12951 378 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 MUSTN1Q8IVN3 82 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 ZNF418Q8TF45 676 aaPredicted RBP11.93□□□□□ -0.5
HOXD3-201ENST00000249440 CHCHD7Q9BUK0 85 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 IGHV3-53P01767 116 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 INSL3P51460 131 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 Q9UF83 564 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 UBE2D4Q9Y2X8 147 aa11.93□□□□□ -0.5
HOXD3-201ENST00000249440 ANK3Q12955 4377 aaKnown RBP11.92□□□□□ -0.5
HOXD3-201ENST00000249440 A0A0B4J2C4 111 aa11.92□□□□□ -0.5
HOXD3-201ENST00000249440 A0A0J9YXY3 114 aa11.92□□□□□ -0.5
HOXD3-201ENST00000249440 WFDC11Q8NEX6 87 aa11.92□□□□□ -0.5
HOXD3-201ENST00000249440 GTSF1LQ9H1H1 148 aa11.92□□□□□ -0.5
HOXD3-201ENST00000249440 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.92□□□□□ -0.5
HOXD3-201ENST00000249440 AZU1P20160 251 aa11.92□□□□□ -0.5
HOXD3-201ENST00000249440 BEAN1Q3B7T3 259 aa11.92□□□□□ -0.5
HOXD3-201ENST00000249440 IGHV1-58A0A0C4DH39 117 aa11.91□□□□□ -0.5
HOXD3-201ENST00000249440 TINCRA0A1B0GVN0 87 aa11.91□□□□□ -0.5
HOXD3-201ENST00000249440 RNASE13Q5GAN3 156 aaKnown RBP11.91□□□□□ -0.5
HOXD3-201ENST00000249440 TMEM86BQ8N661 226 aa11.91□□□□□ -0.5
HOXD3-201ENST00000249440 TMEM263Q8WUH6 116 aaKnown RBP11.91□□□□□ -0.5
HOXD3-201ENST00000249440 CLUHP3Q96NS8 147 aa11.9□□□□□ -0.5
HOXD3-201ENST00000249440 ERG28Q9UKR5 140 aa11.9□□□□□ -0.5
HOXD3-201ENST00000249440 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.89□□□□□ -0.51
HOXD3-201ENST00000249440 TRAV8-3A0A0A6YYJ7 113 aa11.89□□□□□ -0.51
HOXD3-201ENST00000249440 IGKV2-29A2NJV5 120 aaPredicted RBP11.89□□□□□ -0.51
HOXD3-201ENST00000249440 RS1O15537 224 aa11.89□□□□□ -0.51
HOXD3-201ENST00000249440 IGHV3-33P01772 117 aa11.89□□□□□ -0.51
HOXD3-201ENST00000249440 SCGB1A1P11684 91 aa11.89□□□□□ -0.51
HOXD3-201ENST00000249440 IGHV3-38A0A0C4DH36 116 aa11.88□□□□□ -0.51
HOXD3-201ENST00000249440 EIF4EBP3O60516 100 aaPredicted RBP11.88□□□□□ -0.51
HOXD3-201ENST00000249440 Q6ZSV7 163 aa11.88□□□□□ -0.51
HOXD3-201ENST00000249440 TEN1Q86WV5 123 aa11.88□□□□□ -0.51
HOXD3-201ENST00000249440 SBSPONQ8IVN8 264 aa11.88□□□□□ -0.51
HOXD3-201ENST00000249440 VSIG2Q96IQ7 327 aa11.88□□□□□ -0.51
HOXD3-201ENST00000249440 XCL2Q9UBD3 114 aa11.88□□□□□ -0.51
HOXD3-201ENST00000249440 TRAV25A0A0B4J276 109 aa11.87□□□□□ -0.51
HOXD3-201ENST00000249440 ADARB2-AS1A8MUL3 147 aa11.87□□□□□ -0.51
HOXD3-201ENST00000249440 SMAGPQ0VAQ4 97 aa11.87□□□□□ -0.51
HOXD3-201ENST00000249440 STHQ8IWL8 128 aa11.87□□□□□ -0.51
HOXD3-201ENST00000249440 NDUFA12Q9UI09 145 aa11.87□□□□□ -0.51
HOXD3-201ENST00000249440 HIST2H2BDQ6DRA6 164 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms