RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PIEZO1Q92508 2521 aa13.65□□□□□ -0.22
CPSF3-201ENST00000238112 UTP20O75691 2785 aaKnown RBP13.65□□□□□ -0.22
CPSF3-201ENST00000238112 IGSF10Q6WRI0 2623 aa13.65□□□□□ -0.23
CPSF3-201ENST00000238112 H7C2G1 150 aa13.64□□□□□ -0.23
CPSF3-201ENST00000238112 LINC01587Q99440 93 aa13.64□□□□□ -0.23
CPSF3-201ENST00000238112 ANKRD17O75179 2603 aaKnown RBP13.64□□□□□ -0.23
CPSF3-201ENST00000238112 ADARB2-AS1A8MUL3 147 aa13.64□□□□□ -0.23
CPSF3-201ENST00000238112 Q6ZSN1 163 aa13.64□□□□□ -0.23
CPSF3-201ENST00000238112 SPANXA1Q9NS26 97 aa13.64□□□□□ -0.23
CPSF3-201ENST00000238112 EIF4EBP3O60516 100 aaPredicted RBP13.63□□□□□ -0.23
CPSF3-201ENST00000238112 Q1RN00 199 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 SBSPONQ8IVN8 264 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 MAP6D1Q9H9H5 199 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 TRAV8-3A0A0A6YYJ7 113 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 IGHV1-58A0A0C4DH39 117 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 C4orf3Q8WVX3 66 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 CHCHD7Q9BUK0 85 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 Q9UF83 564 aa13.63□□□□□ -0.23
CPSF3-201ENST00000238112 MYO18BQ8IUG5 2567 aa13.62□□□□□ -0.23
CPSF3-201ENST00000238112 Q8N2B8 174 aa13.62□□□□□ -0.23
CPSF3-201ENST00000238112 UBE2D4Q9Y2X8 147 aa13.62□□□□□ -0.23
CPSF3-201ENST00000238112 ZANQ9Y493 2812 aa13.62□□□□□ -0.23
CPSF3-201ENST00000238112 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.62□□□□□ -0.23
CPSF3-201ENST00000238112 TINCRA0A1B0GVN0 87 aa13.62□□□□□ -0.23
CPSF3-201ENST00000238112 IGKV2-29A2NJV5 120 aaPredicted RBP13.62□□□□□ -0.23
CPSF3-201ENST00000238112 INSP01308 110 aa13.61□□□□□ -0.23
CPSF3-201ENST00000238112 CARD19Q96LW7 228 aa13.61□□□□□ -0.23
CPSF3-201ENST00000238112 NDUFA12Q9UI09 145 aa13.61□□□□□ -0.23
CPSF3-201ENST00000238112 C11orf72Q8NBR9 251 aa13.6□□□□□ -0.23
CPSF3-201ENST00000238112 DNAJC30Q96LL9 226 aa13.6□□□□□ -0.23
CPSF3-201ENST00000238112 IGHV3-53P01767 116 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 PRSS2P07478 247 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 ANKRD29Q8N6D5 301 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 LINC00467Q9BRT7 94 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 CDIP1Q9H305 208 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 POLQO75417 2590 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 IGHV3-38A0A0C4DH36 116 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 SLC25A20O43772 301 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 VSIG2Q96IQ7 327 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 LITAFQ99732 161 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 ACACBO00763 2458 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 CACNA1AO00555 2505 aa13.59□□□□□ -0.23
CPSF3-201ENST00000238112 C9JAW5 83 aa13.58□□□□□ -0.23
CPSF3-201ENST00000238112 Q6ZUT4 128 aa13.58□□□□□ -0.23
CPSF3-201ENST00000238112 SPINK8P0C7L1 97 aa13.58□□□□□ -0.24
CPSF3-201ENST00000238112 GEMIN7Q9H840 131 aaKnown RBP13.58□□□□□ -0.24
CPSF3-201ENST00000238112 DEFB114Q30KQ6 69 aa13.57□□□□□ -0.24
CPSF3-201ENST00000238112 FBN2P35556 2912 aa13.57□□□□□ -0.24
CPSF3-201ENST00000238112 BEAN1Q3B7T3 259 aa13.57□□□□□ -0.24
CPSF3-201ENST00000238112 SPANXDQ9BXN6 97 aa13.57□□□□□ -0.24
CPSF3-201ENST00000238112 SPANXCQ9NY87 97 aa13.57□□□□□ -0.24
CPSF3-201ENST00000238112 FHL3Q13643 280 aa13.56□□□□□ -0.24
CPSF3-201ENST00000238112 ATXN8Q156A1 80 aa13.56□□□□□ -0.24
CPSF3-201ENST00000238112 NACAE9PAV3 2078 aa13.56□□□□□ -0.24
CPSF3-201ENST00000238112 MXRA5Q9NR99 2828 aa13.56□□□□□ -0.24
CPSF3-201ENST00000238112 RS1O15537 224 aa13.56□□□□□ -0.24
CPSF3-201ENST00000238112 PRB1P04280 392 aa13.56□□□□□ -0.24
CPSF3-201ENST00000238112 ADAMTSL4-AS1Q5T5F5 129 aa13.55□□□□□ -0.24
CPSF3-201ENST00000238112 A8MZ25 164 aa13.55□□□□□ -0.24
CPSF3-201ENST00000238112 M0QXV9 152 aa13.55□□□□□ -0.24
CPSF3-201ENST00000238112 MIAQ16674 131 aa13.55□□□□□ -0.24
CPSF3-201ENST00000238112 FAM208BQ5VWN6 2430 aa13.54□□□□□ -0.24
CPSF3-201ENST00000238112 A0A1B0GV72 72 aa13.54□□□□□ -0.24
CPSF3-201ENST00000238112 KRTAP10-9P60411 292 aa13.54□□□□□ -0.24
CPSF3-201ENST00000238112 DEFB113Q30KQ7 82 aa13.54□□□□□ -0.24
CPSF3-201ENST00000238112 TRBV30A0A0K0K1B3 111 aa13.53□□□□□ -0.24
CPSF3-201ENST00000238112 HIST2H2BDQ6DRA6 164 aa13.53□□□□□ -0.24
CPSF3-201ENST00000238112 DGAT2L7PQ6IED9 249 aa13.53□□□□□ -0.24
CPSF3-201ENST00000238112 XCL2Q9UBD3 114 aa13.53□□□□□ -0.24
CPSF3-201ENST00000238112 CR1P17927 2039 aa13.53□□□□□ -0.24
CPSF3-201ENST00000238112 ZFAND6Q6FIF0 208 aa13.53□□□□□ -0.24
CPSF3-201ENST00000238112 PRRC2AP48634 2157 aaKnown RBP13.53□□□□□ -0.24
CPSF3-201ENST00000238112 TRIAP1O43715 76 aa13.52□□□□□ -0.24
CPSF3-201ENST00000238112 IGHV3OR16-12A0A075B7B8 117 aa13.52□□□□□ -0.25
CPSF3-201ENST00000238112 NPC2P61916 151 aa13.52□□□□□ -0.25
CPSF3-201ENST00000238112 Q96MF0 132 aa13.52□□□□□ -0.25
CPSF3-201ENST00000238112 MT-ATP8P03928 68 aa13.51□□□□□ -0.25
CPSF3-201ENST00000238112 LINC01620Q4KN68 170 aa13.51□□□□□ -0.25
CPSF3-201ENST00000238112 STHQ8IWL8 128 aa13.51□□□□□ -0.25
CPSF3-201ENST00000238112 YAE1D1Q9NRH1 226 aa13.51□□□□□ -0.25
CPSF3-201ENST00000238112 CDKN2A-AS1Q9UH64 79 aa13.51□□□□□ -0.25
CPSF3-201ENST00000238112 XGP55808 180 aa13.51□□□□□ -0.25
CPSF3-201ENST00000238112 TIRAPP58753 221 aa13.5□□□□□ -0.25
CPSF3-201ENST00000238112 CLUHP3Q96NS8 147 aa13.5□□□□□ -0.25
CPSF3-201ENST00000238112 TMEM262E9PQX1 116 aa13.5□□□□□ -0.25
CPSF3-201ENST00000238112 CIDEAO60543 219 aa13.5□□□□□ -0.25
CPSF3-201ENST00000238112 ODF3L2Q3SX64 289 aa13.5□□□□□ -0.25
CPSF3-201ENST00000238112 ICOSQ9Y6W8 199 aa13.5□□□□□ -0.25
CPSF3-201ENST00000238112 TRGV1A0A0A0MS02 117 aa13.49□□□□□ -0.25
CPSF3-201ENST00000238112 LRRC75A-AS1Q8N1F1 130 aa13.49□□□□□ -0.25
CPSF3-201ENST00000238112 CENPEQ02224 2701 aa13.49□□□□□ -0.25
CPSF3-201ENST00000238112 TIMM17BO60830 172 aa13.48□□□□□ -0.25
CPSF3-201ENST00000238112 IGLV5-45A0A087WSX0 123 aa13.48□□□□□ -0.25
CPSF3-201ENST00000238112 COX6CP09669 75 aa13.48□□□□□ -0.25
CPSF3-201ENST00000238112 TRAV25A0A0B4J276 109 aa13.47□□□□□ -0.25
CPSF3-201ENST00000238112 IFITM1P13164 125 aa13.47□□□□□ -0.25
CPSF3-201ENST00000238112 CKS1BP61024 79 aa13.47□□□□□ -0.25
CPSF3-201ENST00000238112 NAV2Q8IVL1 2488 aa13.47□□□□□ -0.25
CPSF3-201ENST00000238112 PTPN13Q12923 2485 aa13.47□□□□□ -0.25
CPSF3-201ENST00000238112 MYO9AB2RTY4 2548 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms