RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 C5orf56Q8N8D9 126 aa7.91□□□□□ -1.14
VCL-201ENST00000211998 CAMK2N2Q96S95 79 aa7.91□□□□□ -1.14
VCL-201ENST00000211998 TMEM263Q8WUH6 116 aaKnown RBP7.9□□□□□ -1.14
VCL-201ENST00000211998 Q8N9W7 124 aa7.9□□□□□ -1.14
VCL-201ENST00000211998 NRGNQ92686 78 aa7.9□□□□□ -1.14
VCL-201ENST00000211998 Q6ZS46 218 aa7.9□□□□□ -1.14
VCL-201ENST00000211998 APRG1Q8IVJ8 170 aa7.9□□□□□ -1.15
VCL-201ENST00000211998 CRIP3Q6Q6R5 217 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 CDKN2A-AS1Q9UH64 79 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 MYCNOSP40205 109 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 CCL18P55774 89 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 MRPS36P82909 103 aaKnown RBP7.89□□□□□ -1.15
VCL-201ENST00000211998 A6NED7 52 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 URB1-AS1Q96HZ7 61 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 IGLV4-3A0A075B6K6 122 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 GYPEP15421 78 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 FBXL19-AS1Q494R0 122 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 CREBBPQ92793 2442 aa7.89□□□□□ -1.15
VCL-201ENST00000211998 COX7BP24311 80 aa7.88□□□□□ -1.15
VCL-201ENST00000211998 Q6JHZ5 121 aa7.88□□□□□ -1.15
VCL-201ENST00000211998 SOSTDC1Q6X4U4 206 aa7.88□□□□□ -1.15
VCL-201ENST00000211998 GPHB5Q86YW7 130 aa7.88□□□□□ -1.15
VCL-201ENST00000211998 IGHV4OR15-8A0A075B7B6 117 aa7.88□□□□□ -1.15
VCL-201ENST00000211998 A0A087WW49 117 aa7.88□□□□□ -1.15
VCL-201ENST00000211998 CRIP2P52943 208 aaPredicted RBP7.87□□□□□ -1.15
VCL-201ENST00000211998 SPTAN1Q13813 2472 aaKnown RBP7.87□□□□□ -1.15
VCL-201ENST00000211998 PMAIP1Q13794 54 aa7.87□□□□□ -1.15
VCL-201ENST00000211998 C4orf3Q8WVX3 66 aa7.87□□□□□ -1.15
VCL-201ENST00000211998 TRBV27A0A0K0K1C4 114 aa7.87□□□□□ -1.15
VCL-201ENST00000211998 NDUFA1O15239 70 aa7.87□□□□□ -1.15
VCL-201ENST00000211998 IGLV1-47P01700 117 aa7.87□□□□□ -1.15
VCL-201ENST00000211998 FAM19A3Q7Z5A8 133 aa7.86□□□□□ -1.15
VCL-201ENST00000211998 HHLA3Q9XRX5 114 aa7.86□□□□□ -1.15
VCL-201ENST00000211998 SEM1Q6ZVN7 128 aa7.86□□□□□ -1.15
VCL-201ENST00000211998 PRR4Q16378 134 aa7.86□□□□□ -1.15
VCL-201ENST00000211998 EIF4EBP1Q13541 118 aaPredicted RBP7.85□□□□□ -1.15
VCL-201ENST00000211998 CDIP1Q9H305 208 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 A8MZ25 164 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 IGLV2-11P01706 119 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 A0A087WVE0 104 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 MALRD1Q5VYJ5 2156 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 COL4A3Q01955 1670 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 LYRM9A8MSI8 78 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 MIFP14174 115 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 Q8N7P7 452 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 SIRPDQ9H106 197 aa7.85□□□□□ -1.15
VCL-201ENST00000211998 SPAG11BQ08648 103 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 NRACQ8N912 160 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 LINC00467Q9BRT7 94 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 H0Y9J4 135 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 SEC61GP60059 68 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 CACNA1HO95180 2353 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 NOTCH4Q99466 2003 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 UBE2D3P61077 147 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 UBE2D2P62837 147 aa7.84□□□□□ -1.15
VCL-201ENST00000211998 GAS8-AS1O95177 125 aa7.83□□□□□ -1.16
VCL-201ENST00000211998 ZFP36P26651 326 aaKnown RBP7.83□□□□□ -1.16
VCL-201ENST00000211998 LRCOL1A6NCL2 159 aa7.83□□□□□ -1.16
VCL-201ENST00000211998 C1orf229Q6ZS94 237 aaPredicted RBP7.83□□□□□ -1.16
VCL-201ENST00000211998 PCNX2A6NKB5 2137 aa7.83□□□□□ -1.16
VCL-201ENST00000211998 MED13Q9UHV7 2174 aa7.83□□□□□ -1.16
VCL-201ENST00000211998 TRAV7A0A075B6U4 112 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 UBE2D1P51668 147 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 ZFAND3Q9H8U3 227 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 PRO0628Q9UI54 55 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 IGF1P05019 195 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 IGKV4-1P06312 121 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 A6NDX4 124 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 NBASA2RRP1 2371 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 UNQ9165/PRO28630Q6UXU0 137 aa7.82□□□□□ -1.16
VCL-201ENST00000211998 NCKAP5O14513 1909 aa7.81□□□□□ -1.16
VCL-201ENST00000211998 A0A1W2PNU3 283 aaPredicted RBP7.81□□□□□ -1.16
VCL-201ENST00000211998 F8W735 103 aaPredicted RBP7.81□□□□□ -1.16
VCL-201ENST00000211998 ZFAND2AQ8N6M9 145 aa7.81□□□□□ -1.16
VCL-201ENST00000211998 A0A0J9YX75 114 aa7.81□□□□□ -1.16
VCL-201ENST00000211998 IBA57-AS1B1ANH7 110 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 DENND4CQ5VZ89 1909 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 FAM222AQ5U5X8 452 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 SMAD5-AS1Q9Y6J3 95 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 KIAA1549Q9HCM3 1950 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 TNFRSF13BO14836 293 aaPredicted RBP7.8□□□□□ -1.16
VCL-201ENST00000211998 UBE2AP49459 152 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 M0QY20 66 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 ALPK3Q96L96 1907 aa7.8□□□□□ -1.16
VCL-201ENST00000211998 CCKP06307 115 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 C6orf99Q4VX62 202 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 ESM1Q9NQ30 184 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 SMIM11BQ8TCY0 68 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 PLXNB3Q9ULL4 1909 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.79□□□□□ -1.165e-7■■■■□ 21.9
VCL-201ENST00000211998 TRBV10-1A0A0K0K1A3 114 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 WFDC10BQ8IUB3 73 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 Q8NA96 180 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 IL17DQ8TAD2 202 aa7.79□□□□□ -1.16
VCL-201ENST00000211998 TRBV6-5A0A0K0K1A5 114 aa7.78□□□□□ -1.16
VCL-201ENST00000211998 C3orf84H3BNL1 204 aa7.78□□□□□ -1.16
VCL-201ENST00000211998 EBI3Q14213 229 aa7.78□□□□□ -1.16
VCL-201ENST00000211998 DEFB135Q30KP9 77 aa7.78□□□□□ -1.16
VCL-201ENST00000211998 C22orf34Q6ZV56 151 aa7.78□□□□□ -1.16
VCL-201ENST00000211998 LINC00574Q9H8X3 128 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms