RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 IFI27P40305 119 aaPredicted RBP13.48□□□□□ -0.25
CLN3-258ENST00000637184 B9D2Q9BPU9 175 aa13.48□□□□□ -0.25
CLN3-258ENST00000637184 ST20Q9HBF5 79 aa13.48□□□□□ -0.25
CLN3-258ENST00000637184 TENM3Q9P273 2699 aa13.48□□□□□ -0.25
CLN3-258ENST00000637184 LINC00614P0C842 121 aa13.48□□□□□ -0.25
CLN3-258ENST00000637184 RNASEKQ6P5S7 137 aaKnown RBP13.48□□□□□ -0.25
CLN3-258ENST00000637184 A0A0J9YWU9 116 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 TRBV6-5A0A0K0K1A5 114 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 P0DMU3 169 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 FAM231AP0DMU4 169 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 FAM231CP0DMU5 169 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 HOXA5P20719 270 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 LINC00310P59036 64 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 FHL2Q14192 279 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 FA2HQ7L5A8 372 aa13.47□□□□□ -0.25
CLN3-258ENST00000637184 NXT2Q9NPJ8 142 aaKnown RBP13.47□□□□□ -0.25
CLN3-258ENST00000637184 K7EQD1 137 aa13.46□□□□□ -0.25
CLN3-258ENST00000637184 NUPR1O60356 82 aa13.46□□□□□ -0.25
CLN3-258ENST00000637184 PMCHP20382 165 aa13.46□□□□□ -0.25
CLN3-258ENST00000637184 DEFA6Q01524 100 aa13.46□□□□□ -0.25
CLN3-258ENST00000637184 SLC25A29Q8N8R3 303 aa13.46□□□□□ -0.25
CLN3-258ENST00000637184 URB1-AS1Q96HZ7 61 aa13.46□□□□□ -0.25
CLN3-258ENST00000637184 PDZD11Q5EBL8 140 aa13.45□□□□□ -0.26
CLN3-258ENST00000637184 Q8N8P6 123 aa13.45□□□□□ -0.26
CLN3-258ENST00000637184 CHCHD1Q96BP2 118 aaKnown RBP13.45□□□□□ -0.26
CLN3-258ENST00000637184 SMIM2Q9BVW6 85 aa13.45□□□□□ -0.26
CLN3-258ENST00000637184 TNFRSF18Q9Y5U5 241 aa13.45□□□□□ -0.26
CLN3-258ENST00000637184 TRBV6-4A0A1B0GX49 114 aa13.45□□□□□ -0.26
CLN3-258ENST00000637184 ATP5G1P05496 136 aa13.45□□□□□ -0.26
CLN3-258ENST00000637184 AP5S1Q9NUS5 200 aa13.45□□□□□ -0.26
CLN3-258ENST00000637184 SDHAF1A6NFY7 115 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 HSBP1O75506 76 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 ESDP10768 282 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 HIST3H2BBQ8N257 126 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 DNAJC30Q96LL9 226 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 TMEM70Q9BUB7 260 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 Q9UF83 564 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 HHLA3Q9XRX5 114 aa13.44□□□□□ -0.26
CLN3-258ENST00000637184 IGLV2-18A0A075B6J9 118 aa13.43□□□□□ -0.26
CLN3-258ENST00000637184 TRBV10-1A0A0K0K1A3 114 aa13.43□□□□□ -0.26
CLN3-258ENST00000637184 C12orf74Q32Q52 190 aa13.43□□□□□ -0.26
CLN3-258ENST00000637184 NEXN-AS1Q8NBZ9 246 aa13.43□□□□□ -0.26
CLN3-258ENST00000637184 S100A2P29034 98 aa13.43□□□□□ -0.26
CLN3-258ENST00000637184 POLR2KP53803 58 aaKnown RBP13.43□□□□□ -0.26
CLN3-258ENST00000637184 RPL32P62910 135 aaKnown RBP13.43□□□□□ -0.26
CLN3-258ENST00000637184 VCYO14598 125 aa13.42□□□□□ -0.26
CLN3-258ENST00000637184 RHOHQ15669 191 aa13.42□□□□□ -0.26
CLN3-258ENST00000637184 PRADC1Q9BSG0 188 aa13.42□□□□□ -0.26
CLN3-258ENST00000637184 RPL36AP83881 106 aaKnown RBP13.41□□□□□ -0.26
CLN3-258ENST00000637184 C11orf45Q8TAV5 145 aa13.41□□□□□ -0.26
CLN3-258ENST00000637184 RPL36ALQ969Q0 106 aaKnown RBP13.41□□□□□ -0.26
CLN3-258ENST00000637184 PRO0255Q9UI72 69 aa13.41□□□□□ -0.26
CLN3-258ENST00000637184 HUWE1Q7Z6Z7 4374 aaKnown RBP13.41□□□□□ -0.26
CLN3-258ENST00000637184 TRBV7-3A0A075B6L6 115 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 TRBV27A0A0K0K1C4 114 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 NEGR1Q7Z3B1 354 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 ZNRF2Q8NHG8 242 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 KIR2DL4Q99706 377 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 LINC01546A6NGU7 62 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 TCAPO15273 167 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 CRYBA4P53673 196 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 FAM19A2Q8N3H0 131 aa13.4□□□□□ -0.26
CLN3-258ENST00000637184 F5H768 121 aa13.39□□□□□ -0.27
CLN3-258ENST00000637184 HTN3P15516 51 aa13.39□□□□□ -0.27
CLN3-258ENST00000637184 AMTP48728 403 aa13.39□□□□□ -0.27
CLN3-258ENST00000637184 GAGE12JA6NER3 117 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 I3L3M4 83 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 K7EMI3 77 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 NHLRC4P0CG21 123 aaPredicted RBP13.38□□□□□ -0.27
CLN3-258ENST00000637184 GAGE1Q13065 139 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 GAGE4Q13068 117 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 GAGE5Q13069 117 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 LAGE3Q14657 143 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 PMCHL1Q16048 86 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 GAGE13Q4V321 117 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 TMEM18Q96B42 140 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 MEGF8Q7Z7M0 2845 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 DNAH9Q9NYC9 4486 aa13.38□□□□□ -0.27
CLN3-258ENST00000637184 IGHV1-24A0A0C4DH33 117 aa13.37□□□□□ -0.27
CLN3-258ENST00000637184 LOC100131303A0A0U1RQF7 123 aa13.37□□□□□ -0.27
CLN3-258ENST00000637184 HIST1H2BLQ99880 126 aa13.37□□□□□ -0.27
CLN3-258ENST00000637184 IFITM10A6NMD0 228 aa13.37□□□□□ -0.27
CLN3-258ENST00000637184 PAX4O43316 350 aa13.37□□□□□ -0.27
CLN3-258ENST00000637184 FABP4P15090 132 aa13.37□□□□□ -0.27
CLN3-258ENST00000637184 NANOS2P60321 138 aaKnown RBP13.37□□□□□ -0.27
CLN3-258ENST00000637184 Q6ZTC4 211 aa13.37□□□□□ -0.27
CLN3-258ENST00000637184 ORMDL2Q53FV1 153 aa13.36□□□□□ -0.27
CLN3-258ENST00000637184 DEFB104AQ8WTQ1 72 aa13.36□□□□□ -0.27
CLN3-258ENST00000637184 LOC105371267A0A1B0GV96 52 aa13.35□□□□□ -0.27
CLN3-258ENST00000637184 FCER1GP30273 86 aa13.35□□□□□ -0.27
CLN3-258ENST00000637184 UBE2D3P61077 147 aa13.35□□□□□ -0.27
CLN3-258ENST00000637184 UBE2D2P62837 147 aa13.35□□□□□ -0.27
CLN3-258ENST00000637184 COL7A1Q02388 2944 aa13.35□□□□□ -0.27
CLN3-258ENST00000637184 GYPEP15421 78 aa13.35□□□□□ -0.27
CLN3-258ENST00000637184 PHLDA1Q8WV24 401 aaPredicted RBP13.35□□□□□ -0.27
CLN3-258ENST00000637184 PACRGQ96M98 296 aaPredicted RBP13.35□□□□□ -0.27
CLN3-258ENST00000637184 TRAV26-1A0A087WT03 109 aa13.34□□□□□ -0.27
CLN3-258ENST00000637184 IGHV3-38A0A0C4DH36 116 aa13.34□□□□□ -0.27
CLN3-258ENST00000637184 A0A0J9YY99 117 aa13.34□□□□□ -0.27
CLN3-258ENST00000637184 DAZ4Q86SG3 579 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms