RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 KCNIP4Q6PIL6 250 aa13.66□□□□□ -0.22
UPF3A-211ENST00000618700 TRAV9-1A0A075B6T8 112 aa13.65□□□□□ -0.22
UPF3A-211ENST00000618700 CAMPP49913 170 aa13.65□□□□□ -0.22
UPF3A-211ENST00000618700 RNF185Q96GF1 192 aa13.65□□□□□ -0.22
UPF3A-211ENST00000618700 S100A8P05109 93 aa13.64□□□□□ -0.23
UPF3A-211ENST00000618700 SRIP30626 198 aa13.64□□□□□ -0.23
UPF3A-211ENST00000618700 ATRAIDQ6UW56 229 aa13.64□□□□□ -0.23
UPF3A-211ENST00000618700 AMN1Q8IY45 258 aa13.64□□□□□ -0.23
UPF3A-211ENST00000618700 GAGE12JA6NER3 117 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 H7C1H1 209 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 S100PP25815 95 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 GAGE1Q13065 139 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 GAGE4Q13068 117 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 GAGE5Q13069 117 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 GAGE13Q4V321 117 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 SH2D6Q7Z4S9 175 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 NEXN-AS1Q8NBZ9 246 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 LINC00476Q8WZB0 136 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 URGCP-MRPS24S4R325 110 aa13.63□□□□□ -0.23
UPF3A-211ENST00000618700 TRAV26-2A0A0B4J265 109 aa13.62□□□□□ -0.23
UPF3A-211ENST00000618700 RAB4AP20338 218 aa13.62□□□□□ -0.23
UPF3A-211ENST00000618700 NEGR1Q7Z3B1 354 aa13.62□□□□□ -0.23
UPF3A-211ENST00000618700 FRZBQ92765 325 aa13.62□□□□□ -0.23
UPF3A-211ENST00000618700 RPL36AP83881 106 aaKnown RBP13.61□□□□□ -0.23
UPF3A-211ENST00000618700 FAM104BQ5XKR9 115 aa13.61□□□□□ -0.23
UPF3A-211ENST00000618700 LGALS9CQ6DKI2 356 aa13.61□□□□□ -0.23
UPF3A-211ENST00000618700 RASL11AQ6T310 242 aa13.61□□□□□ -0.23
UPF3A-211ENST00000618700 RPL36ALQ969Q0 106 aaKnown RBP13.61□□□□□ -0.23
UPF3A-211ENST00000618700 SACSQ9NZJ4 4579 aa13.61□□□□□ -0.23
UPF3A-211ENST00000618700 TRBV7-3A0A075B6L6 115 aa13.6□□□□□ -0.23
UPF3A-211ENST00000618700 LCE6AA0A183 80 aa13.6□□□□□ -0.23
UPF3A-211ENST00000618700 UBE2D3P61077 147 aa13.6□□□□□ -0.23
UPF3A-211ENST00000618700 UBE2D2P62837 147 aa13.6□□□□□ -0.23
UPF3A-211ENST00000618700 ESRGQ1W209 222 aa13.6□□□□□ -0.23
UPF3A-211ENST00000618700 ZNRF2Q8NHG8 242 aa13.6□□□□□ -0.23
UPF3A-211ENST00000618700 TIRAPP58753 221 aa13.59□□□□□ -0.23
UPF3A-211ENST00000618700 ATP6V0E2Q8NHE4 81 aa13.59□□□□□ -0.23
UPF3A-211ENST00000618700 MRAP2Q96G30 205 aa13.59□□□□□ -0.23
UPF3A-211ENST00000618700 DNAJC30Q96LL9 226 aa13.59□□□□□ -0.23
UPF3A-211ENST00000618700 LINC00588Q9Y4M8 146 aa13.59□□□□□ -0.23
UPF3A-211ENST00000618700 RYR3Q15413 4870 aa13.59□□□□□ -0.23
UPF3A-211ENST00000618700 MRPL51Q4U2R6 128 aaKnown RBP13.58□□□□□ -0.24
UPF3A-211ENST00000618700 LYPD5Q6UWN5 251 aa13.58□□□□□ -0.24
UPF3A-211ENST00000618700 NIT2Q9NQR4 276 aa13.58□□□□□ -0.24
UPF3A-211ENST00000618700 DNAH6Q9C0G6 4158 aa13.57□□□□□ -0.24
UPF3A-211ENST00000618700 GAS8-AS1O95177 125 aa13.57□□□□□ -0.24
UPF3A-211ENST00000618700 CCL18P55774 89 aa13.57□□□□□ -0.24
UPF3A-211ENST00000618700 MRPS16Q9Y3D3 137 aaKnown RBP13.57□□□□□ -0.24
UPF3A-211ENST00000618700 TMEM238LA0A1B0GVL6 79 aa13.56□□□□□ -0.24
UPF3A-211ENST00000618700 ELOBQ15370 118 aa13.56□□□□□ -0.24
UPF3A-211ENST00000618700 TMEM136Q6ZRR5 245 aa13.56□□□□□ -0.24
UPF3A-211ENST00000618700 RPL39LQ96EH5 51 aaKnown RBP13.56□□□□□ -0.24
UPF3A-211ENST00000618700 YPEL4Q96NS1 127 aa13.56□□□□□ -0.24
UPF3A-211ENST00000618700 GTSF1LQ9H1H1 148 aa13.56□□□□□ -0.24
UPF3A-211ENST00000618700 LY6G6CO95867 125 aa13.55□□□□□ -0.24
UPF3A-211ENST00000618700 NCR2O95944 276 aa13.55□□□□□ -0.24
UPF3A-211ENST00000618700 UBE2DNLQ8IWF7 75 aa13.55□□□□□ -0.24
UPF3A-211ENST00000618700 UPK3BQ9BT76 320 aa13.55□□□□□ -0.24
UPF3A-211ENST00000618700 TNFRSF18Q9Y5U5 241 aa13.55□□□□□ -0.24
UPF3A-211ENST00000618700 TRBV24-1A0A075B6N3 115 aa13.54□□□□□ -0.24
UPF3A-211ENST00000618700 TRBV6-5A0A0K0K1A5 114 aa13.54□□□□□ -0.24
UPF3A-211ENST00000618700 SMKR1H3BMG3 65 aa13.54□□□□□ -0.24
UPF3A-211ENST00000618700 RPS10P46783 165 aaKnown RBP13.54□□□□□ -0.24
UPF3A-211ENST00000618700 CBLN2Q8IUK8 224 aa13.54□□□□□ -0.24
UPF3A-211ENST00000618700 RYR2Q92736 4967 aa13.53□□□□□ -0.24
UPF3A-211ENST00000618700 TGIF2-C20orf24A0A0A6YYL0 155 aa13.53□□□□□ -0.24
UPF3A-211ENST00000618700 OR10J3Q5JRS4 329 aa13.53□□□□□ -0.24
UPF3A-211ENST00000618700 DAZ4Q86SG3 579 aaKnown RBP13.53□□□□□ -0.24
UPF3A-211ENST00000618700 NRACQ8N912 160 aa13.53□□□□□ -0.24
UPF3A-211ENST00000618700 DAZ3Q9NR90 486 aaKnown RBP13.53□□□□□ -0.24
UPF3A-211ENST00000618700 SMCO4Q9NRQ5 59 aa13.53□□□□□ -0.24
UPF3A-211ENST00000618700 HYDINQ4G0P3 5121 aa13.53□□□□□ -0.24
UPF3A-211ENST00000618700 COX19Q49B96 90 aa13.52□□□□□ -0.25
UPF3A-211ENST00000618700 GNB1LQ9BYB4 327 aa13.52□□□□□ -0.25
UPF3A-211ENST00000618700 IGHV3-38A0A0C4DH36 116 aa13.51□□□□□ -0.25
UPF3A-211ENST00000618700 D6R8Y8 96 aa13.51□□□□□ -0.25
UPF3A-211ENST00000618700 HLA-DQA1P01909 254 aa13.51□□□□□ -0.25
UPF3A-211ENST00000618700 PPBPP02775 128 aa13.51□□□□□ -0.25
UPF3A-211ENST00000618700 CKS2P33552 79 aa13.51□□□□□ -0.25
UPF3A-211ENST00000618700 LELP1Q5T871 98 aa13.51□□□□□ -0.25
UPF3A-211ENST00000618700 KMT2AQ03164 3969 aa13.51□□□□□ -0.25
UPF3A-211ENST00000618700 PPP1R17O96001 155 aa13.5□□□□□ -0.25
UPF3A-211ENST00000618700 SDHAF1A6NFY7 115 aa13.49□□□□□ -0.25
UPF3A-211ENST00000618700 ATP6V1G1O75348 118 aa13.49□□□□□ -0.25
UPF3A-211ENST00000618700 ORMDL3Q8N138 153 aa13.49□□□□□ -0.25
UPF3A-211ENST00000618700 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-211ENST00000618700 MT-ND6P03923 174 aa13.48□□□□□ -0.25
UPF3A-211ENST00000618700 NTM-AS1Q6ZSK4 140 aa13.48□□□□□ -0.25
UPF3A-211ENST00000618700 TMEM70Q9BUB7 260 aa13.48□□□□□ -0.25
UPF3A-211ENST00000618700 ST20Q9HBF5 79 aa13.48□□□□□ -0.25
UPF3A-211ENST00000618700 TRBV6-8A0A0A6YYG3 113 aa13.47□□□□□ -0.25
UPF3A-211ENST00000618700 PHOX2AO14813 284 aa13.47□□□□□ -0.25
UPF3A-211ENST00000618700 NPYP01303 97 aa13.47□□□□□ -0.25
UPF3A-211ENST00000618700 POLR2KP53803 58 aaKnown RBP13.47□□□□□ -0.25
UPF3A-211ENST00000618700 TMEM97Q5BJF2 176 aa13.47□□□□□ -0.25
UPF3A-211ENST00000618700 WFDC10BQ8IUB3 73 aa13.47□□□□□ -0.25
UPF3A-211ENST00000618700 TNFRSF6BO95407 300 aa13.46□□□□□ -0.25
UPF3A-211ENST00000618700 APCSP02743 223 aa13.46□□□□□ -0.25
UPF3A-211ENST00000618700 SUMO2P61956 95 aaKnown RBP13.46□□□□□ -0.25
UPF3A-211ENST00000618700 PRELID3AQ96N28 172 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 162.7 ms