RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 C9orf85Q96MD7 179 aa10.91□□□□□ -0.66
CDH1-213ENST00000612417 GTSF1LQ9H1H1 148 aa10.91□□□□□ -0.66
CDH1-213ENST00000612417 CYSLTR1Q9Y271 337 aa10.91□□□□□ -0.66
CDH1-213ENST00000612417 SETD2Q9BYW2 2564 aaPredicted RBP10.9□□□□□ -0.66
CDH1-213ENST00000612417 TRAV12-3A0A0B4J271 114 aa10.9□□□□□ -0.66
CDH1-213ENST00000612417 MYMXA0A1B0GTQ4 84 aa10.9□□□□□ -0.66
CDH1-213ENST00000612417 K7EQG2 157 aa10.9□□□□□ -0.66
CDH1-213ENST00000612417 RNASE1P07998 156 aaKnown RBP10.9□□□□□ -0.66
CDH1-213ENST00000612417 SYNJ2BPP57105 145 aa10.9□□□□□ -0.66
CDH1-213ENST00000612417 SNRPD3P62318 126 aaKnown RBP10.9□□□□□ -0.66
CDH1-213ENST00000612417 CD300EQ496F6 205 aaPredicted RBP10.9□□□□□ -0.66
CDH1-213ENST00000612417 SUMO4Q6EEV6 95 aa10.9□□□□□ -0.66
CDH1-213ENST00000612417 C18orf65Q6ZTR6 163 aa10.9□□□□□ -0.66
CDH1-213ENST00000612417 NHP2Q9NX24 153 aaKnown RBP10.9□□□□□ -0.66
CDH1-213ENST00000612417 TRBV7-3A0A075B6L6 115 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 TRBV6-5A0A0K0K1A5 114 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 LGALS9O00182 355 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 DEFB136Q30KP8 78 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 IGHV3-16A0A0C4DH30 117 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 J3QR89 54 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 K7ERJ3 54 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 ZNF688P0C7X2 276 aa10.89□□□□□ -0.67
CDH1-213ENST00000612417 HOXD3P31249 432 aaPredicted RBP10.89□□□□□ -0.67
CDH1-213ENST00000612417 IGIPA6NJ69 53 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 VCYO14598 125 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 DUSP14O95147 198 aaKnown RBP10.88□□□□□ -0.67
CDH1-213ENST00000612417 HIST2H2BDQ6DRA6 164 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 ZFP2Q6ZN57 461 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 SPATA25Q9BR10 227 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 JPT2Q9H910 190 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 TNFRSF18Q9Y5U5 241 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 TRBV27A0A0K0K1C4 114 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 CRYGDP07320 174 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 HILS1P60008 231 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 C11orf44Q8N8P7 122 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 HIST1H4GQ99525 98 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 KIR2DL4Q99706 377 aa10.88□□□□□ -0.67
CDH1-213ENST00000612417 FLNBO75369 2602 aaKnown RBP10.88□□□□□ -0.67
CDH1-213ENST00000612417 A0A1B0GWB2 263 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 TSHBP01222 138 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 PAPPA-AS1Q5QFB9 102 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 KLHL30-AS1Q8NEE0 82 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 TMEM141Q96I45 108 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 TIMM17AQ99595 171 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 PRADC1Q9BSG0 188 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 TP53TG1Q9Y2A0 90 aa10.87□□□□□ -0.67
CDH1-213ENST00000612417 A0A087WWL8 130 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 GAGE12HA6NDE8 117 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 SLURP1P55000 103 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 C12orf74Q32Q52 190 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 SYT8Q8NBV8 401 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 C4orf3Q8WVX3 66 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 IGLV4-69A0A075B6H9 119 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 SDHAF1A6NFY7 115 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 HERV-K104P63124 156 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 DUX3Q96PT4 197 aa10.86□□□□□ -0.67
CDH1-213ENST00000612417 IGLL5B9A064 214 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 INAFM1C9JVW0 142 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 Q8N1Y9 231 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 HIVEP1P15822 2718 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 IGHV1OR15-1A0A075B7D0 117 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 A0A1W2PRX2 142 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 PMVKQ15126 192 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 LINC01006Q8NI28 216 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 MDFICQ9P1T7 246 aa10.85□□□□□ -0.67
CDH1-213ENST00000612417 WNK1Q9H4A3 2382 aa10.84□□□□□ -0.67
CDH1-213ENST00000612417 TRAV12-2A0A075B6T6 113 aa10.84□□□□□ -0.67
CDH1-213ENST00000612417 F5H697 171 aa10.84□□□□□ -0.67
CDH1-213ENST00000612417 M0QY20 66 aa10.84□□□□□ -0.67
CDH1-213ENST00000612417 C16orf95Q9H693 158 aa10.84□□□□□ -0.67
CDH1-213ENST00000612417 MRPL16Q9NX20 251 aaKnown RBP10.84□□□□□ -0.67
CDH1-213ENST00000612417 C11orf86A6NJI1 115 aa10.83□□□□□ -0.68
CDH1-213ENST00000612417 CD28P10747 220 aa10.83□□□□□ -0.68
CDH1-213ENST00000612417 FOXI2Q6ZQN5 318 aa10.83□□□□□ -0.68
CDH1-213ENST00000612417 NSUN5P1Q3KNT7 163 aa10.83□□□□□ -0.68
CDH1-213ENST00000612417 MORN3Q6PF18 240 aaPredicted RBP10.83□□□□□ -0.68
CDH1-213ENST00000612417 AMTNQ6UX39 209 aa10.83□□□□□ -0.68
CDH1-213ENST00000612417 ZNF815PA8K554 130 aa10.82□□□□□ -0.68
CDH1-213ENST00000612417 HERVK_113P61574 105 aa10.82□□□□□ -0.68
CDH1-213ENST00000612417 RPL39P62891 51 aaKnown RBP10.82□□□□□ -0.68
CDH1-213ENST00000612417 RHOHQ15669 191 aa10.82□□□□□ -0.68
CDH1-213ENST00000612417 SPINK13Q1W4C9 94 aa10.82□□□□□ -0.68
CDH1-213ENST00000612417 FAM74A4Q5TZK3 123 aa10.82□□□□□ -0.68
CDH1-213ENST00000612417 ZNF256Q9Y2P7 627 aaPredicted RBP10.82□□□□□ -0.68
CDH1-213ENST00000612417 IGKV3-20P01619 116 aa10.81□□□□□ -0.68
CDH1-213ENST00000612417 ZNF876PQ49A33 203 aa10.81□□□□□ -0.68
CDH1-213ENST00000612417 TRPT1Q86TN4 253 aaKnown RBP10.81□□□□□ -0.68
CDH1-213ENST00000612417 RAX2Q96IS3 184 aa10.81□□□□□ -0.68
CDH1-213ENST00000612417 NSD1Q96L73 2696 aaPredicted RBP10.81□□□□□ -0.68
CDH1-213ENST00000612417 SETXQ7Z333 2677 aaKnown RBP10.81□□□□□ -0.68
CDH1-213ENST00000612417 ZNF56Q15929 161 aa10.81□□□□□ -0.68
CDH1-213ENST00000612417 RRN3P1Q2M238 152 aa10.81□□□□□ -0.68
CDH1-213ENST00000612417 SORL1Q92673 2214 aa10.81□□□□□ -0.68
CDH1-213ENST00000612417 TRGV11A0A075B6L2 103 aa10.8□□□□□ -0.68
CDH1-213ENST00000612417 CITED2Q99967 270 aaPredicted RBP10.8□□□□□ -0.68
CDH1-213ENST00000612417 PEMTQ9UBM1 199 aa10.8□□□□□ -0.68
CDH1-213ENST00000612417 A8MTW9 85 aa10.8□□□□□ -0.68
CDH1-213ENST00000612417 DLX4Q92988 240 aaPredicted RBP10.8□□□□□ -0.68
CDH1-213ENST00000612417 EDA2RQ9HAV5 297 aa10.8□□□□□ -0.68
CDH1-213ENST00000612417 TSSC4Q9Y5U2 329 aaPredicted RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms