RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 KRTAP10-4P60372 401 aaPredicted RBP11.59□□□□□ -0.55
SHKBP1-227ENST00000602011 EIF5AL1Q6IS14 154 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-227ENST00000602011 ENHOQ6UWT2 76 aa11.59□□□□□ -0.55
SHKBP1-227ENST00000602011 DNAJC30Q96LL9 226 aa11.59□□□□□ -0.55
SHKBP1-227ENST00000602011 ANGP03950 147 aaKnown RBP11.58□□□□□ -0.56
SHKBP1-227ENST00000602011 SLC51BQ86UW2 128 aa11.58□□□□□ -0.56
SHKBP1-227ENST00000602011 SSBP4Q9BWG4 385 aaPredicted RBP11.58□□□□□ -0.56
SHKBP1-227ENST00000602011 PKHD1L1Q86WI1 4243 aa11.58□□□□□ -0.56
SHKBP1-227ENST00000602011 OR5AL1P0C617 328 aa11.57□□□□□ -0.56
SHKBP1-227ENST00000602011 ZNF56Q15929 161 aa11.57□□□□□ -0.56
SHKBP1-227ENST00000602011 C15orf54Q8N8G6 183 aa11.57□□□□□ -0.56
SHKBP1-227ENST00000602011 NEXN-AS1Q8NBZ9 246 aa11.57□□□□□ -0.56
SHKBP1-227ENST00000602011 CHCHD5Q9BSY4 110 aa11.57□□□□□ -0.56
SHKBP1-227ENST00000602011 UMAD1C9J7I0 102 aa11.56□□□□□ -0.56
SHKBP1-227ENST00000602011 SNAI2O43623 268 aa11.56□□□□□ -0.56
SHKBP1-227ENST00000602011 C9orf62Q8N4C0 152 aa11.56□□□□□ -0.56
SHKBP1-227ENST00000602011 CLRN3Q8NCR9 226 aa11.56□□□□□ -0.56
SHKBP1-227ENST00000602011 VAX2Q9UIW0 290 aa11.56□□□□□ -0.56
SHKBP1-227ENST00000602011 SMIM17P0DL12 118 aa11.55□□□□□ -0.56
SHKBP1-227ENST00000602011 MPV17L2Q567V2 206 aa11.55□□□□□ -0.56
SHKBP1-227ENST00000602011 SPANXN1Q5VSR9 72 aa11.55□□□□□ -0.56
SHKBP1-227ENST00000602011 C9orf163Q8N9P6 203 aa11.55□□□□□ -0.56
SHKBP1-227ENST00000602011 MLST8Q9BVC4 326 aa11.55□□□□□ -0.56
SHKBP1-227ENST00000602011 PRR34Q9NV39 138 aa11.55□□□□□ -0.56
SHKBP1-227ENST00000602011 USP17L23D6RBM5 183 aa11.54□□□□□ -0.56
SHKBP1-227ENST00000602011 F5H697 171 aa11.54□□□□□ -0.56
SHKBP1-227ENST00000602011 PAGE4O60829 102 aa11.54□□□□□ -0.56
SHKBP1-227ENST00000602011 RPL19P84098 196 aaKnown RBP11.54□□□□□ -0.56
SHKBP1-227ENST00000602011 BAGE2Q86Y30 109 aa11.54□□□□□ -0.56
SHKBP1-227ENST00000602011 MBD3L1Q8WWY6 194 aa11.54□□□□□ -0.56
SHKBP1-227ENST00000602011 TRBV25-1A0A075B6N4 114 aa11.53□□□□□ -0.56
SHKBP1-227ENST00000602011 RAB5CP51148 216 aa11.53□□□□□ -0.56
SHKBP1-227ENST00000602011 RPL37AP61513 92 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-227ENST00000602011 OR10AG1Q8NH19 301 aa11.53□□□□□ -0.56
SHKBP1-227ENST00000602011 SFT2D1Q8WV19 159 aa11.52□□□□□ -0.57
SHKBP1-227ENST00000602011 PLA2G2DQ9UNK4 145 aa11.52□□□□□ -0.57
SHKBP1-227ENST00000602011 TRAV8-4A0A0B4J246 113 aa11.51□□□□□ -0.57
SHKBP1-227ENST00000602011 H7C1H1 209 aa11.51□□□□□ -0.57
SHKBP1-227ENST00000602011 P01737 135 aa11.51□□□□□ -0.57
SHKBP1-227ENST00000602011 HLA-DQA1P01909 254 aa11.51□□□□□ -0.57
SHKBP1-227ENST00000602011 AP1S3Q96PC3 154 aa11.51□□□□□ -0.57
SHKBP1-227ENST00000602011 DERL1Q9BUN8 251 aa11.51□□□□□ -0.57
SHKBP1-227ENST00000602011 PRSS1P07477 247 aa11.5□□□□□ -0.57
SHKBP1-227ENST00000602011 GZMBP10144 247 aa11.5□□□□□ -0.57
SHKBP1-227ENST00000602011 RBX1P62877 108 aa11.5□□□□□ -0.57
SHKBP1-227ENST00000602011 IQCJQ1A5X6 159 aa11.5□□□□□ -0.57
SHKBP1-227ENST00000602011 NKX2-5P52952 324 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-227ENST00000602011 NTM-AS1Q6ZSK4 140 aa11.49□□□□□ -0.57
SHKBP1-227ENST00000602011 LINC00269Q8N2A0 174 aa11.49□□□□□ -0.57
SHKBP1-227ENST00000602011 KIF25-AS1Q9Y6Z4 181 aa11.49□□□□□ -0.57
SHKBP1-227ENST00000602011 IGHV1-24A0A0C4DH33 117 aa11.48□□□□□ -0.57
SHKBP1-227ENST00000602011 RPS20P60866 119 aaKnown RBP11.48□□□□□ -0.57
SHKBP1-227ENST00000602011 SDIM1Q6ZPB5 146 aa11.48□□□□□ -0.57
SHKBP1-227ENST00000602011 A0A1B0GUV1 79 aa11.47□□□□□ -0.57
SHKBP1-227ENST00000602011 SULT1A2P50226 295 aa11.47□□□□□ -0.57
SHKBP1-227ENST00000602011 CNBPP62633 177 aaKnown RBP11.47□□□□□ -0.57
SHKBP1-227ENST00000602011 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 SCO2A0A1W2PP80 73 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 TEX46H3BTG2 121 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 H2AFB1P0C5Y9 115 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 CACNG7P62955 275 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 GAGE6Q13070 117 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 KRTAP26-1Q6PEX3 210 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 FAM213BQ8TBF2 198 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 DAZAP1Q96EP5 407 aaKnown RBP11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 RNF185Q96GF1 192 aa11.46□□□□□ -0.57
SHKBP1-227ENST00000602011 XKRY2A2RUG3 117 aa11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 F2Z2F3 143 aa11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 M0QY20 66 aa11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 HNRNPA3P51991 378 aaKnown RBP11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 REG3AQ06141 175 aa11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 Q6ZRU5 148 aa11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 SMIM12Q96EX1 92 aa11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 AP5S1Q9NUS5 200 aa11.45□□□□□ -0.58
SHKBP1-227ENST00000602011 TRAV1-1A0A0B4J248 108 aa11.43□□□□□ -0.58
SHKBP1-227ENST00000602011 RPL35P42766 123 aaKnown RBP11.43□□□□□ -0.58
SHKBP1-227ENST00000602011 CIRBPQ14011 172 aaKnown RBP11.43□□□□□ -0.58
SHKBP1-227ENST00000602011 MANBALQ9NQG1 85 aa11.43□□□□□ -0.58
SHKBP1-227ENST00000602011 IGHV3-64A0A075B6Q5 118 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 MUC21A0A0G2JKD1 596 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 MUC21A0A140T8X8 626 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 SSTP61278 116 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 BLOC1S1P78537 153 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 FER1L6-AS1Q8NA97 138 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 C11orf52Q96A22 123 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 PGLYRP4Q96LB8 373 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 TMEM243Q9BU79 118 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 BIN3Q9NQY0 253 aa11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.42□□□□□ -0.58
SHKBP1-227ENST00000602011 hDV102S1A0JD36 115 aa11.41□□□□□ -0.58
SHKBP1-227ENST00000602011 TRGC1P0CF51 173 aa11.41□□□□□ -0.58
SHKBP1-227ENST00000602011 IGLC6P0CF74 106 aa11.41□□□□□ -0.58
SHKBP1-227ENST00000602011 WDR73Q6P4I2 378 aa11.41□□□□□ -0.58
SHKBP1-227ENST00000602011 CFAP161Q6P656 301 aa11.41□□□□□ -0.58
SHKBP1-227ENST00000602011 RASL11AQ6T310 242 aa11.41□□□□□ -0.58
SHKBP1-227ENST00000602011 DPH3Q96FX2 82 aa11.41□□□□□ -0.58
SHKBP1-227ENST00000602011 CLPSL2Q6UWE3 100 aa11.4□□□□□ -0.58
SHKBP1-227ENST00000602011 ALKAL2Q6UX46 152 aa11.4□□□□□ -0.58
SHKBP1-227ENST00000602011 C20orf203Q8NBC4 194 aa11.4□□□□□ -0.58
SHKBP1-227ENST00000602011 NIT2Q9NQR4 276 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms