RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SLPIP03973 132 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 RBX1P62877 108 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 DNLZQ5SXM8 178 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 FAM162BQ5T6X4 162 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 ZFP82Q8N141 532 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 CHCHD7Q9BUK0 85 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 NDUFA13Q9P0J0 144 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 LPAP08519 4548 aa5.5□□□□□ -1.53
SHKBP1-220ENST00000599716 TRBV10-1A0A0K0K1A3 114 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 A0A0U1RQV1 116 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 MBP02144 154 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 UBE2G1P62253 170 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 ZNF674Q2M3X9 581 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 OR10G8Q8NGN5 311 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 AQP10Q96PS8 301 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 GFRA4Q9GZZ7 299 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 TNFSF18Q9UNG2 199 aa5.49□□□□□ -1.53
SHKBP1-220ENST00000599716 A0A087WYN8 130 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 CTXND1A0A1B0GTU2 59 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 A0A1B0GV50 99 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 hDV102S1A0JD36 115 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 F5H697 171 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 SERF2P84101 59 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 MIAQ16674 131 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 CST9LP1Q5W188 147 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 PRR27Q6MZM9 219 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 DPH3Q96FX2 82 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 DERL1Q9BUN8 251 aa5.48□□□□□ -1.53
SHKBP1-220ENST00000599716 MAP1LC3B2A6NCE7 125 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 PHOX2AO14813 284 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 LTAP01374 205 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 FHITP49789 147 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 RAB4BP61018 213 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 DGAT2L7PQ6IED9 249 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 Q6ZRU5 148 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 COX8CQ7Z4L0 72 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 KRTAP19-1Q8IUB9 90 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 HIST1H2BAQ96A08 127 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 FMC1Q96HJ9 113 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 MAP1LC3BQ9GZQ8 125 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 PRR34Q9NV39 138 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 ZFP30Q9Y2G7 519 aa5.47□□□□□ -1.53
SHKBP1-220ENST00000599716 IGLV4-60A0A075B6I1 120 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 FXYD6-FXYD2A0A087WZ82 144 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 A0A0D9SG52 128 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 TRBV6-1A0A0K0K1D8 114 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 SCO2A0A1W2PP80 73 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 GZMBP10144 247 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 AKR1C3P42330 323 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 DEFA1P59665 94 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 REG3AQ06141 175 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 LINC00299Q6ZSB3 139 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 C20orf203Q8NBC4 194 aa5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 INO80EQ8NBZ0 244 aaPredicted RBP5.46□□□□□ -1.54
SHKBP1-220ENST00000599716 TRBV25-1A0A075B6N4 114 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 IGKV2-24A0A0C4DH68 120 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 IGKV3OR2-268A0A0C4DH90 116 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 PAGE4O60829 102 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 MGPP08493 103 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 CIRBPQ14011 172 aaKnown RBP5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 AKR1C8PQ5T2L2 129 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 SPANXN1Q5VSR9 72 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 LYPD6BQ8NI32 183 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 SPACA4Q8TDM5 124 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 TPPP3Q9BW30 176 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 ZNF471Q9BX82 626 aaPredicted RBP5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 MED28Q9H204 178 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 KIF25-AS1Q9Y6Z4 181 aa5.45□□□□□ -1.54
SHKBP1-220ENST00000599716 IGHV3-64A0A075B6Q5 118 aa5.44□□□□□ -1.54
SHKBP1-220ENST00000599716 NKX2-5P52952 324 aaPredicted RBP5.44□□□□□ -1.54
SHKBP1-220ENST00000599716 HIGD2BQ4VC39 106 aa5.44□□□□□ -1.54
SHKBP1-220ENST00000599716 PRSS3P2Q8NHM4 247 aa5.44□□□□□ -1.54
SHKBP1-220ENST00000599716 STOML3Q8TAV4 291 aa5.44□□□□□ -1.54
SHKBP1-220ENST00000599716 VAX2Q9UIW0 290 aa5.44□□□□□ -1.54
SHKBP1-220ENST00000599716 BORCS7-ASMTA0A0B4J1R7 106 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 IGHV1-24A0A0C4DH33 117 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 A6NHS1 94 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 SNAI2O43623 268 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 CNBPP62633 177 aaKnown RBP5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 COX6A2Q02221 97 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 IQCJQ1A5X6 159 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 SUMO4Q6EEV6 95 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 BAGE2Q86Y30 109 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 C15orf56Q8N910 161 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 GTSF1Q8WW33 167 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 DPH3P1Q9H4G8 78 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 CYTL1Q9NRR1 136 aa5.43□□□□□ -1.54
SHKBP1-220ENST00000599716 GAGE12HA6NDE8 117 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 G3V3Q6 166 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 SMLR1H3BR10 107 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 M0QY20 66 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 MAJINQ3KP22 176 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 CLRN3Q8NCR9 226 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 MLST8Q9BVC4 326 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 SSBP4Q9BWG4 385 aaPredicted RBP5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 NKX6-2Q9C056 277 aaPredicted RBP5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 AP5S1Q9NUS5 200 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 PLAC8Q9NZF1 115 aa5.42□□□□□ -1.54
SHKBP1-220ENST00000599716 ARPC5O15511 151 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms