RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 NDUFA4O00483 81 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 PRR9Q5T870 116 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 MRPL53Q96EL3 112 aaKnown RBP8.67□□□□□ -1.02
CLN3-238ENST00000569430 ABCA2Q9BZC7 2435 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 TRGV11A0A075B6L2 103 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 IGHV3-53P01767 116 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 MORN3Q6PF18 240 aaPredicted RBP8.67□□□□□ -1.02
CLN3-238ENST00000569430 PRIMA1Q86XR5 153 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 TMEM101Q96IK0 257 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 USMG5Q96IX5 58 aa8.67□□□□□ -1.02
CLN3-238ENST00000569430 RAI1Q7Z5J4 1906 aaPredicted RBP8.66□□□□□ -1.02
CLN3-238ENST00000569430 IGHV7-4-1A0A0J9YVY3 117 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 LY6LH3BQJ8 138 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 SRSF2Q01130 221 aaKnown RBP8.66□□□□□ -1.02
CLN3-238ENST00000569430 GAGE2AQ6NT46 116 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 Q8N1Y9 231 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 PIFOQ8TCI5 191 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 CLEC2BQ92478 149 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 HIVEP3Q5T1R4 2406 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 IGHV1OR15-1A0A075B7D0 117 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 ZMAT4Q9H898 229 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 EDA2RQ9HAV5 297 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 C9orf153Q5TBE3 101 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 C20orf173Q96LM9 149 aa8.66□□□□□ -1.02
CLN3-238ENST00000569430 CEMP1Q6PRD7 247 aaPredicted RBP8.65□□□□□ -1.02
CLN3-238ENST00000569430 BLCAPP62952 87 aa8.65□□□□□ -1.02
CLN3-238ENST00000569430 COPS9Q8WXC6 57 aa8.65□□□□□ -1.02
CLN3-238ENST00000569430 ZFAND3Q9H8U3 227 aa8.65□□□□□ -1.02
CLN3-238ENST00000569430 FN1P02751 2386 aaKnown RBP8.65□□□□□ -1.03
CLN3-238ENST00000569430 LEPROTO15243 131 aa8.65□□□□□ -1.03
CLN3-238ENST00000569430 NFE4Q86UQ8 179 aa8.65□□□□□ -1.03
CLN3-238ENST00000569430 MDFICQ9P1T7 246 aa8.65□□□□□ -1.03
CLN3-238ENST00000569430 BSNQ9UPA5 3926 aa8.65□□□□□ -1.03
CLN3-238ENST00000569430 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.64□□□□□ -1.03
CLN3-238ENST00000569430 IGKV2-29A2NJV5 120 aaPredicted RBP8.64□□□□□ -1.03
CLN3-238ENST00000569430 SLC25A29Q8N8R3 303 aa8.64□□□□□ -1.03
CLN3-238ENST00000569430 NAV2Q8IVL1 2488 aa8.64□□□□□ -1.03
CLN3-238ENST00000569430 DEFB131AP59861 70 aa8.64□□□□□ -1.03
CLN3-238ENST00000569430 CNFNQ9BYD5 112 aa8.64□□□□□ -1.03
CLN3-238ENST00000569430 LY6DQ14210 128 aa8.63□□□□□ -1.03
CLN3-238ENST00000569430 POLQO75417 2590 aa8.63□□□□□ -1.03
CLN3-238ENST00000569430 F8W735 103 aaPredicted RBP8.63□□□□□ -1.03
CLN3-238ENST00000569430 ZFAND2AQ8N6M9 145 aa8.63□□□□□ -1.03
CLN3-238ENST00000569430 C11orf44Q8N8P7 122 aa8.63□□□□□ -1.03
CLN3-238ENST00000569430 NDUFV3P56181 108 aaKnown RBP8.63□□□□□ -1.03
CLN3-238ENST00000569430 LINC00158P58513 81 aa8.63□□□□□ -1.03
CLN3-238ENST00000569430 UBE2E2Q96LR5 201 aa8.63□□□□□ -1.03
CLN3-238ENST00000569430 TRAV4A0A0B4J268 109 aa8.62□□□□□ -1.03
CLN3-238ENST00000569430 TNFRSF13BO14836 293 aaPredicted RBP8.62□□□□□ -1.03
CLN3-238ENST00000569430 AJUBAQ96IF1 538 aa8.62□□□□□ -1.03
CLN3-238ENST00000569430 TIMM17AQ99595 171 aa8.62□□□□□ -1.03
CLN3-238ENST00000569430 CCL19Q99731 98 aa8.62□□□□□ -1.03
CLN3-238ENST00000569430 C11orf68Q9H3H3 251 aaKnown RBP8.62□□□□□ -1.03
CLN3-238ENST00000569430 ICOSQ9Y6W8 199 aa8.62□□□□□ -1.03
CLN3-238ENST00000569430 RHODO00212 210 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 IGHV1-69P01742 117 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 IGHG4P01861 327 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 COL27A1Q8IZC6 1860 aaPredicted RBP8.61□□□□□ -1.03
CLN3-238ENST00000569430 IGHV3-30-3P0DP02 117 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 CRIP2P52943 208 aaPredicted RBP8.61□□□□□ -1.03
CLN3-238ENST00000569430 Q8NA96 180 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 IGLV2-18A0A075B6J9 118 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 TRGV1A0A0A0MS02 117 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 IGHV3-33P01772 117 aa8.61□□□□□ -1.03
CLN3-238ENST00000569430 TRBV10-2A0A0K0K1G8 114 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 ODF3BA8MYP8 253 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 P0DMU3 169 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 FAM231AP0DMU4 169 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 FAM231CP0DMU5 169 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 HERV-K104P63124 156 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 C5orf56Q8N8D9 126 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 FAM236AA0A1B0GUQ0 79 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 FAM236BA0A1B0GV22 79 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 IGHV3-30P01768 117 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 IGHV3-30-5P0DP03 117 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 HIST1H4AP62805 103 aaKnown RBP8.6□□□□□ -1.03
CLN3-238ENST00000569430 RHOHQ15669 191 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 TRGV2A0A075B6R0 118 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 GATA3P23771 443 aa8.6□□□□□ -1.03
CLN3-238ENST00000569430 Q9H8V8 135 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 CRYBG3Q68DQ2 2970 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 A8MZ25 164 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 PAX4O43316 350 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 CRPP02741 224 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 HOXD3P31249 432 aaPredicted RBP8.59□□□□□ -1.03
CLN3-238ENST00000569430 HIVEP2P31629 2446 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 A0A1W2PRX2 142 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 UBE2D1P51668 147 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 C20orf203Q8NBC4 194 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 CHCHD5Q9BSY4 110 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 XCL2Q9UBD3 114 aa8.59□□□□□ -1.03
CLN3-238ENST00000569430 PRRC2AP48634 2157 aaKnown RBP8.59□□□□□ -1.03
CLN3-238ENST00000569430 PKD1L2Q7Z442 2459 aa8.59□□□□□ -1.04
CLN3-238ENST00000569430 A0A0J9YXY3 114 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 CCDC179H3BU77 68 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 ZNRF2Q8NHG8 242 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 CDIP1Q9H305 208 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 CLPSL1A2RUU4 121 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 TRIAP1O43715 76 aa8.58□□□□□ -1.04
CLN3-238ENST00000569430 RNASE3P12724 160 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms