RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 ZFP2Q6ZN57 461 aa9.94□□□□□ -0.82
USP3-221ENST00000561442 ATP5L2Q7Z4Y8 100 aa9.94□□□□□ -0.82
USP3-221ENST00000561442 TMEM18Q96B42 140 aa9.94□□□□□ -0.82
USP3-221ENST00000561442 IFITM10A6NMD0 228 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 RHODO00212 210 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 CIDEAO60543 219 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 CRYGDP07320 174 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 SRIP30626 198 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 MRPL23Q16540 153 aaKnown RBP9.93□□□□□ -0.82
USP3-221ENST00000561442 ESRGQ1W209 222 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 PACRGQ96M98 296 aaPredicted RBP9.93□□□□□ -0.82
USP3-221ENST00000561442 GFRA4Q9GZZ7 299 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 LINC00588Q9Y4M8 146 aa9.93□□□□□ -0.82
USP3-221ENST00000561442 ESDP10768 282 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 RHOHQ15669 191 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 C14orf178Q8N769 122 aaPredicted RBP9.92□□□□□ -0.82
USP3-221ENST00000561442 TSKUQ8WUA8 353 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 GTSF1Q8WW33 167 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 HIST1H2BLQ99880 126 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 PRADC1Q9BSG0 188 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 NIT2Q9NQR4 276 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 MSRB1Q9NZV6 116 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 NAT8BQ9UHF3 227 aa9.92□□□□□ -0.82
USP3-221ENST00000561442 IGLV2-18A0A075B6J9 118 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 TRBV6-4A0A1B0GX49 114 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 A8MWL6 223 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 F2Z2F3 143 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 CTRLP40313 264 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 CACNG7P62955 275 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 Q0VG73 95 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 OR10D4PQ8NGN7 298 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 AP1S3Q96PC3 154 aa9.91□□□□□ -0.82
USP3-221ENST00000561442 MRPL18Q9H0U6 180 aaKnown RBP9.91□□□□□ -0.82
USP3-221ENST00000561442 FABP4P15090 132 aa9.9□□□□□ -0.82
USP3-221ENST00000561442 ZNF56Q15929 161 aa9.9□□□□□ -0.82
USP3-221ENST00000561442 OR10J3Q5JRS4 329 aa9.9□□□□□ -0.82
USP3-221ENST00000561442 NEGR1Q7Z3B1 354 aa9.9□□□□□ -0.82
USP3-221ENST00000561442 PGLYRP4Q96LB8 373 aa9.9□□□□□ -0.82
USP3-221ENST00000561442 Q9UF83 564 aa9.9□□□□□ -0.82
USP3-221ENST00000561442 GAGE12JA6NER3 117 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 M0R2N4 97 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 SMIM17P0DL12 118 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 GAGE1Q13065 139 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 GAGE4Q13068 117 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 GAGE5Q13069 117 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 JOSD1Q15040 202 aaPredicted RBP9.89□□□□□ -0.83
USP3-221ENST00000561442 GAGE13Q4V321 117 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 ZNRF2Q8NHG8 242 aa9.89□□□□□ -0.83
USP3-221ENST00000561442 F5H697 171 aa9.88□□□□□ -0.83
USP3-221ENST00000561442 MGPP08493 103 aa9.88□□□□□ -0.83
USP3-221ENST00000561442 NTF3P20783 257 aa9.88□□□□□ -0.83
USP3-221ENST00000561442 TWIST1Q15672 202 aa9.88□□□□□ -0.83
USP3-221ENST00000561442 PYY3Q5JQD4 70 aa9.88□□□□□ -0.83
USP3-221ENST00000561442 LYPD5Q6UWN5 251 aa9.88□□□□□ -0.83
USP3-221ENST00000561442 TMEM136Q6ZRR5 245 aa9.88□□□□□ -0.83
USP3-221ENST00000561442 MRPS16Q9Y3D3 137 aaKnown RBP9.88□□□□□ -0.83
USP3-221ENST00000561442 KIF25-AS1Q9Y6Z4 181 aa9.87□□□□□ -0.83
USP3-221ENST00000561442 NACAE9PAV3 2078 aa9.87□□□□□ -0.83
USP3-221ENST00000561442 FRAS1Q86XX4 4008 aa9.87□□□□□ -0.83
USP3-221ENST00000561442 A0A1B0GW15 77 aa9.86□□□□□ -0.83
USP3-221ENST00000561442 HIGD1CA8MV81 97 aa9.86□□□□□ -0.83
USP3-221ENST00000561442 EVI2AP22794 236 aa9.86□□□□□ -0.83
USP3-221ENST00000561442 FOXA3P55318 350 aaPredicted RBP9.86□□□□□ -0.83
USP3-221ENST00000561442 RAB4BP61018 213 aa9.86□□□□□ -0.83
USP3-221ENST00000561442 CNFNQ9BYD5 112 aa9.86□□□□□ -0.83
USP3-221ENST00000561442 DNAH17Q9UFH2 4485 aa9.86□□□□□ -0.83
USP3-221ENST00000561442 PCP4L1A6NKN8 68 aa9.85□□□□□ -0.83
USP3-221ENST00000561442 LINC00315P59091 139 aa9.85□□□□□ -0.83
USP3-221ENST00000561442 PDZD11Q5EBL8 140 aa9.85□□□□□ -0.83
USP3-221ENST00000561442 SH2D6Q7Z4S9 175 aa9.85□□□□□ -0.83
USP3-221ENST00000561442 UPK3BQ9BT76 320 aa9.85□□□□□ -0.83
USP3-221ENST00000561442 Q9H8V8 135 aa9.85□□□□□ -0.83
USP3-221ENST00000561442 A0A1B0GXF2 115 aa9.84□□□□□ -0.83
USP3-221ENST00000561442 APCSP02743 223 aa9.84□□□□□ -0.83
USP3-221ENST00000561442 LINC00694P0DN24 101 aa9.84□□□□□ -0.83
USP3-221ENST00000561442 IQCJQ1A5X6 159 aa9.84□□□□□ -0.83
USP3-221ENST00000561442 NUP35Q8NFH5 326 aa9.84□□□□□ -0.83
USP3-221ENST00000561442 ATP6V0E2Q8NHE4 81 aa9.84□□□□□ -0.83
USP3-221ENST00000561442 BORCS7Q96B45 105 aa9.84□□□□□ -0.83
USP3-221ENST00000561442 A0A1B0GUT8 65 aa9.83□□□□□ -0.84
USP3-221ENST00000561442 HBBP68871 147 aa9.83□□□□□ -0.84
USP3-221ENST00000561442 SUMO4Q6EEV6 95 aa9.83□□□□□ -0.84
USP3-221ENST00000561442 NEXN-AS1Q8NBZ9 246 aa9.83□□□□□ -0.84
USP3-221ENST00000561442 DPH3P1Q9H4G8 78 aa9.83□□□□□ -0.84
USP3-221ENST00000561442 TRBV10-1A0A0K0K1A3 114 aa9.82□□□□□ -0.84
USP3-221ENST00000561442 NBDYA0A0U1RRE5 68 aa9.82□□□□□ -0.84
USP3-221ENST00000561442 RPL36AP83881 106 aaKnown RBP9.82□□□□□ -0.84
USP3-221ENST00000561442 MRPL54Q6P161 138 aaKnown RBP9.82□□□□□ -0.84
USP3-221ENST00000561442 SMIM15Q7Z3B0 74 aa9.82□□□□□ -0.84
USP3-221ENST00000561442 BAGE3Q86Y29 109 aa9.82□□□□□ -0.84
USP3-221ENST00000561442 WFDC10BQ8IUB3 73 aa9.82□□□□□ -0.84
USP3-221ENST00000561442 RPL36ALQ969Q0 106 aaKnown RBP9.82□□□□□ -0.84
USP3-221ENST00000561442 GTSF1LQ9H1H1 148 aa9.82□□□□□ -0.84
USP3-221ENST00000561442 FAT2Q9NYQ8 4349 aa9.81□□□□□ -0.84
USP3-221ENST00000561442 TSTD3H0UI37 97 aa9.81□□□□□ -0.84
USP3-221ENST00000561442 SIVA1O15304 175 aa9.81□□□□□ -0.84
USP3-221ENST00000561442 TIRAPP58753 221 aa9.81□□□□□ -0.84
USP3-221ENST00000561442 PKIAP61925 76 aa9.81□□□□□ -0.84
USP3-221ENST00000561442 Q6ZR54 194 aa9.81□□□□□ -0.84
USP3-221ENST00000561442 GATD1Q8NB37 220 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms