RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 CLLU1Q5K131 121 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 ATP6V0E2Q8NHE4 81 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 PKHD1P08F94 4074 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 KIF13AQ9H1H9 1805 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 ZMYM4Q5VZL5 1548 aa-1.15□□□□□ -2.59
VPS13C-205ENST00000558088 MYO18BQ8IUG5 2567 aa-1.16□□□□□ -2.59
VPS13C-205ENST00000558088 CCDC179H3BU77 68 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 J3QLW9 94 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 SPINK4O60575 86 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 PAEPP09466 180 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 RPL7P18124 248 aaKnown RBP-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 SPRR1BP22528 89 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 TRIQKQ629K1 86 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 BAGE3Q86Y29 109 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 THEM6Q8WUY1 208 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 HOPXQ9BPY8 73 aaPredicted RBP-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 EPPK1P58107 5090 aaKnown RBP-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 GVINP1Q7Z2Y8 2422 aa-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 YTHDC2Q9H6S0 1430 aaKnown RBP-1.16□□□□□ -2.6
VPS13C-205ENST00000558088 IBTKQ9P2D0 1353 aaPredicted RBP-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 A0A1W2PRE2 83 aa-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 MT-ND4LP03901 98 aa-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 POLR2HP52434 150 aaKnown RBP-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 RPRMQ9NS64 109 aa-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 ZNF609O15014 1411 aa-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 ADGBQ8N7X0 1667 aa-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 AKAP11Q9UKA4 1901 aa-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 ERCC6L2Q5T890 1561 aa-1.17□□□□□ -2.6
VPS13C-205ENST00000558088 KLK9Q2XQG4 91 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 TMEM91Q6ZNR0 172 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 TMEM35BQ8NCS4 154 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 CHMP6Q96FZ7 201 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 CCDC115Q96NT0 180 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 BANF2Q9H503 90 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 DNAJC15Q9Y5T4 150 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 ANKHD1Q8IWZ3 2542 aaKnown RBP-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 URB1O60287 2271 aaKnown RBP-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 SONP18583 2426 aaKnown RBP-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 CAMSAP1Q5T5Y3 1602 aa-1.18□□□□□ -2.6
VPS13C-205ENST00000558088 NBPF19A0A087WUL8 3843 aa-1.19□□□□□ -2.6
VPS13C-205ENST00000558088 TNFP01375 233 aa-1.19□□□□□ -2.6
VPS13C-205ENST00000558088 COX6B1P14854 86 aa-1.19□□□□□ -2.6
VPS13C-205ENST00000558088 ATP11AUNQ6ZP68 121 aa-1.19□□□□□ -2.6
VPS13C-205ENST00000558088 NDUFA12Q9UI09 145 aa-1.19□□□□□ -2.6
VPS13C-205ENST00000558088 CASZ1Q86V15 1759 aa-1.19□□□□□ -2.6
VPS13C-205ENST00000558088 TEP1Q99973 2627 aaKnown RBP-1.19□□□□□ -2.6
VPS13C-205ENST00000558088 MED23Q9ULK4 1368 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 MYH3P11055 1940 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 HLA-DRB4P13762 266 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 KRTAP6-2Q3LI66 62 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 TMEM78Q5T7P6 136 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 TMEM244Q5VVB8 128 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 C10orf82Q8WW14 230 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 HLA-DRB4X5D2U9 266 aa-1.2□□□□□ -2.6
VPS13C-205ENST00000558088 PHIPQ8WWQ0 1821 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 YPEL1O60688 119 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 DPM2O94777 84 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 SPRR2AP35326 72 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 Q5VV11 94 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 SPTSSBQ8NFR3 76 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 OR9Q1Q8NGQ5 310 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 BOLA2Q9H3K6 86 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 PTPRMP28827 1452 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 FER1L6Q2WGJ9 1857 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 PCNX1Q96RV3 2341 aa-1.21□□□□□ -2.6
VPS13C-205ENST00000558088 WDR7Q9Y4E6 1490 aa-1.22□□□□□ -2.6
VPS13C-205ENST00000558088 CTXND1A0A1B0GTU2 59 aa-1.22□□□□□ -2.6
VPS13C-205ENST00000558088 LINC01545Q5VT33 79 aa-1.22□□□□□ -2.6
VPS13C-205ENST00000558088 OR8I2Q8N0Y5 310 aa-1.22□□□□□ -2.6
VPS13C-205ENST00000558088 ATPIF1Q9UII2 106 aa-1.22□□□□□ -2.6
VPS13C-205ENST00000558088 PLXNB2O15031 1838 aa-1.22□□□□□ -2.61
VPS13C-205ENST00000558088 USP9XQ93008 2570 aaPredicted RBP-1.22□□□□□ -2.61
VPS13C-205ENST00000558088 KIAA0100Q14667 2235 aaKnown RBP-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 BIRC6Q9NR09 4857 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 NRXN2Q9P2S2 1712 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 G0S2P27469 103 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 CMPK1P30085 196 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 UBE2G1P62253 170 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 SAMD13Q5VXD3 122 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 PPP1R2P3Q6NXS1 205 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 CTAGE3PQ8IX95 158 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 SMIM4Q8WVI0 70 aa-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 ZNF142P52746 1687 aaPredicted RBP-1.23□□□□□ -2.61
VPS13C-205ENST00000558088 ARAP1Q96P48 1450 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 I3L2K1 104 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 IFNA17P01571 189 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 PIRTP0C851 137 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 UBE2D1P51668 147 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 C9orf116Q5BN46 136 aaPredicted RBP-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 SPANXN1Q5VSR9 72 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 DEFB105AQ8NG35 78 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 PCBD2Q9H0N5 130 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 LSM2Q9Y333 95 aaKnown RBP-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 LAMA2P24043 3122 aaKnown RBP-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 ARFGEF1Q9Y6D6 1849 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 PLXNA2O75051 1894 aa-1.24□□□□□ -2.61
VPS13C-205ENST00000558088 SPG11Q96JI7 2443 aa-1.25□□□□□ -2.61
VPS13C-205ENST00000558088 PPP1R17O96001 155 aa-1.25□□□□□ -2.61
VPS13C-205ENST00000558088 SPRR2EP22531 72 aa-1.25□□□□□ -2.61
VPS13C-205ENST00000558088 S100A7L2Q5SY68 101 aa-1.25□□□□□ -2.61
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms