RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 AP5S1Q9NUS5 200 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 X6R8D5 127 aa8.91□□□□□ -0.98
SHMT2-230ENST00000557427 IGHV3OR16-12A0A075B7B8 117 aa8.9□□□□□ -0.98
SHMT2-230ENST00000557427 C16orf90A8MZG2 172 aa8.9□□□□□ -0.98
SHMT2-230ENST00000557427 NPYP01303 97 aa8.9□□□□□ -0.98
SHMT2-230ENST00000557427 MIFP14174 115 aa8.9□□□□□ -0.98
SHMT2-230ENST00000557427 BTF3P20290 206 aaKnown RBP8.9□□□□□ -0.98
SHMT2-230ENST00000557427 S100A4P26447 101 aaKnown RBP8.9□□□□□ -0.98
SHMT2-230ENST00000557427 KIR3DS1Q14943 382 aa8.9□□□□□ -0.98
SHMT2-230ENST00000557427 Q6ZR54 194 aa8.9□□□□□ -0.98
SHMT2-230ENST00000557427 PRO1933Q9H354 126 aa8.9□□□□□ -0.98
SHMT2-230ENST00000557427 LINC01546A6NGU7 62 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 NXPH4O95158 308 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 LEPROTL1O95214 131 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 DDTP30046 118 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 PMCHL1Q16048 86 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 TDRG1Q3Y452 100 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 FAM159AQ6UWV7 190 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 MAP1LC3AQ9H492 121 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 HSPB8Q9UJY1 196 aa8.89□□□□□ -0.99
SHMT2-230ENST00000557427 PRSS47A8MTI9 375 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 SMKR1H3BMG3 65 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 CRXO43186 299 aaPredicted RBP8.88□□□□□ -0.99
SHMT2-230ENST00000557427 RNASE3P12724 160 aaKnown RBP8.88□□□□□ -0.99
SHMT2-230ENST00000557427 EVI2AP22794 236 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 IFI27P40305 119 aaPredicted RBP8.88□□□□□ -0.99
SHMT2-230ENST00000557427 CDKN1BP46527 198 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 EMP1P54849 157 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 AMTNQ6UX39 209 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 MRAP2Q96G30 205 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 C20orf144Q9BQM9 153 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 TMEM70Q9BUB7 260 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 VAMP8Q9BV40 100 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 PHLDA3Q9Y5J5 127 aa8.88□□□□□ -0.99
SHMT2-230ENST00000557427 TRAV12-3A0A0B4J271 114 aa8.87□□□□□ -0.99
SHMT2-230ENST00000557427 GNRH2O43555 120 aa8.87□□□□□ -0.99
SHMT2-230ENST00000557427 TNFRSF6BO95407 300 aa8.87□□□□□ -0.99
SHMT2-230ENST00000557427 NCR2O95944 276 aa8.87□□□□□ -0.99
SHMT2-230ENST00000557427 DPH3P1Q9H4G8 78 aa8.87□□□□□ -0.99
SHMT2-230ENST00000557427 NXT2Q9NPJ8 142 aaKnown RBP8.87□□□□□ -0.99
SHMT2-230ENST00000557427 MYCBP2O75592 4640 aa8.86□□□□□ -0.99
SHMT2-230ENST00000557427 IGLV2-18A0A075B6J9 118 aa8.86□□□□□ -0.99
SHMT2-230ENST00000557427 LOC389332A0A1B0GUA5 103 aa8.86□□□□□ -0.99
SHMT2-230ENST00000557427 SYS1-DBNDD2H3BUS1 97 aa8.86□□□□□ -0.99
SHMT2-230ENST00000557427 PET117Q6UWS5 81 aa8.86□□□□□ -0.99
SHMT2-230ENST00000557427 Q6ZTC4 211 aa8.86□□□□□ -0.99
SHMT2-230ENST00000557427 MAP1LC3CQ9BXW4 147 aa8.86□□□□□ -0.99
SHMT2-230ENST00000557427 IGHV1OR15-1A0A075B7D0 117 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 A0A096LNJ9 63 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 C20orf202A1L168 122 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 M0R381 172 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 HBDP02042 147 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 TNP2Q05952 138 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 SPINK13Q1W4C9 94 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 ZNF705AQ6ZN79 300 aaPredicted RBP8.85□□□□□ -0.99
SHMT2-230ENST00000557427 NRACQ8N912 160 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 C9orf85Q96MD7 179 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 CLUHP3Q96NS8 147 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 AP1S3Q96PC3 154 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 CELA1Q9UNI1 258 aa8.85□□□□□ -0.99
SHMT2-230ENST00000557427 TIMM8BQ9Y5J9 83 aaPredicted RBP8.85□□□□□ -0.99
SHMT2-230ENST00000557427 P0DMU3 169 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 FAM231AP0DMU4 169 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 FAM231CP0DMU5 169 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 C12orf74Q32Q52 190 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 LINC00173Q6ZV60 143 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 SPATA12Q7Z6I5 190 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 C1orf158Q8N1D5 194 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 Q8N8P6 123 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 TMEM208Q9BTX3 173 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 NDUFAF3Q9BU61 184 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 GOLT1BQ9Y3E0 138 aa8.84□□□□□ -0.99
SHMT2-230ENST00000557427 TRAV12-2A0A075B6T6 113 aa8.83□□□□□ -1
SHMT2-230ENST00000557427 TRAV10A0A0B4J240 114 aa8.83□□□□□ -1
SHMT2-230ENST00000557427 IGHV3-16A0A0C4DH30 117 aa8.83□□□□□ -1
SHMT2-230ENST00000557427 SMIM9A6NGZ8 99 aa8.83□□□□□ -1
SHMT2-230ENST00000557427 GAS8-AS1O95177 125 aa8.83□□□□□ -1
SHMT2-230ENST00000557427 PRM2P04554 102 aa8.83□□□□□ -1
SHMT2-230ENST00000557427 PAM16Q9Y3D7 125 aa8.83□□□□□ -1
SHMT2-230ENST00000557427 TRGV11A0A075B6L2 103 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 TRAV9-2A0A087WT02 112 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 PPP1R17O96001 155 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 INAFM2P0DMQ5 153 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 GATA1P15976 413 aaPredicted RBP8.82□□□□□ -1
SHMT2-230ENST00000557427 CTAG1AP78358 180 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 SPATA45Q537H7 98 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 LINC01545Q5VT33 79 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 SYT8Q8NBV8 401 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 C20orf78Q9BR46 151 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 KIF25-AS1Q9Y6Z4 181 aa8.82□□□□□ -1
SHMT2-230ENST00000557427 SPART-AS1P0CW21 52 aa8.81□□□□□ -1
SHMT2-230ENST00000557427 FCER1GP30273 86 aa8.81□□□□□ -1
SHMT2-230ENST00000557427 C1orf134Q5TEV5 83 aa8.81□□□□□ -1
SHMT2-230ENST00000557427 C14orf178Q8N769 122 aaPredicted RBP8.81□□□□□ -1
SHMT2-230ENST00000557427 C14orf144Q96I85 54 aa8.81□□□□□ -1
SHMT2-230ENST00000557427 MIEN1Q9BRT3 115 aa8.81□□□□□ -1
SHMT2-230ENST00000557427 LINC00467Q9BRT7 94 aa8.81□□□□□ -1
SHMT2-230ENST00000557427 DEFB131BA0A096LNP1 70 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 TRAV26-2A0A0B4J265 109 aa8.8□□□□□ -1
SHMT2-230ENST00000557427 K7EMI3 77 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms