RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LINC01546A6NGU7 62 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 ADARB2-AS1A8MUL3 147 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 SEC11AP67812 179 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 CST9LQ9H4G1 147 aa12.46□□□□□ -0.41
USP28-208ENST00000540438 C9orf118A6NHY6 69 aa12.46□□□□□ -0.42
USP28-208ENST00000540438 DYNLRB2Q8TF09 96 aa12.46□□□□□ -0.42
USP28-208ENST00000540438 SPCS1Q9Y6A9 102 aa12.46□□□□□ -0.42
USP28-208ENST00000540438 Q6ZSN1 163 aa12.45□□□□□ -0.42
USP28-208ENST00000540438 KIR2DL4Q99706 377 aa12.45□□□□□ -0.42
USP28-208ENST00000540438 SMR3AQ99954 134 aa12.45□□□□□ -0.42
USP28-208ENST00000540438 WFDC10AQ9H1F0 79 aa12.45□□□□□ -0.42
USP28-208ENST00000540438 MRPL16Q9NX20 251 aaKnown RBP12.45□□□□□ -0.42
USP28-208ENST00000540438 ZNF815PA8K554 130 aa12.44□□□□□ -0.42
USP28-208ENST00000540438 HLA-DRB4P13762 266 aa12.44□□□□□ -0.42
USP28-208ENST00000540438 HLA-DRB4X5D2U9 266 aa12.44□□□□□ -0.42
USP28-208ENST00000540438 IGHV3-53P01767 116 aa12.44□□□□□ -0.42
USP28-208ENST00000540438 SMIM13P0DJ93 91 aa12.44□□□□□ -0.42
USP28-208ENST00000540438 FOSL1P15407 271 aa12.43□□□□□ -0.42
USP28-208ENST00000540438 SAMD5Q5TGI4 173 aa12.43□□□□□ -0.42
USP28-208ENST00000540438 C20orf78Q9BR46 151 aa12.43□□□□□ -0.42
USP28-208ENST00000540438 SPAG8Q99932 426 aaPredicted RBP12.43□□□□□ -0.42
USP28-208ENST00000540438 ESM1Q9NQ30 184 aa12.43□□□□□ -0.42
USP28-208ENST00000540438 LINC01587Q99440 93 aa12.43□□□□□ -0.42
USP28-208ENST00000540438 VPS25Q9BRG1 176 aa12.43□□□□□ -0.42
USP28-208ENST00000540438 H3BRM9 83 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 M0QY20 66 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 ELANEP08246 267 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 PLA2G2AP14555 144 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 POLR2KP53803 58 aaKnown RBP12.42□□□□□ -0.42
USP28-208ENST00000540438 RBX1P62877 108 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 APOMO95445 188 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 TSPEAR-AS2P59090 65 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 CEND1Q8N111 149 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 ZNRF2Q8NHG8 242 aa12.42□□□□□ -0.42
USP28-208ENST00000540438 AZU1P20160 251 aa12.41□□□□□ -0.42
USP28-208ENST00000540438 PLNP26678 52 aa12.41□□□□□ -0.42
USP28-208ENST00000540438 Q6ZSV7 163 aa12.41□□□□□ -0.42
USP28-208ENST00000540438 KRTAP1-3Q8IUG1 177 aa12.41□□□□□ -0.42
USP28-208ENST00000540438 LINC01619G3V211 115 aa12.41□□□□□ -0.42
USP28-208ENST00000540438 CD28P10747 220 aa12.41□□□□□ -0.42
USP28-208ENST00000540438 RIPPLY3P57055 190 aa12.41□□□□□ -0.42
USP28-208ENST00000540438 SRSF9Q13242 221 aaKnown RBP eCLIP12.41□□□□□ -0.42
USP28-208ENST00000540438 A8MZ25 164 aa12.4□□□□□ -0.42
USP28-208ENST00000540438 J3QLI3 93 aa12.4□□□□□ -0.42
USP28-208ENST00000540438 A0A1W2PPM0 123 aa12.4□□□□□ -0.42
USP28-208ENST00000540438 VCYO14598 125 aa12.4□□□□□ -0.42
USP28-208ENST00000540438 RPL24P83731 157 aaKnown RBP12.4□□□□□ -0.43
USP28-208ENST00000540438 C9orf85Q96MD7 179 aa12.4□□□□□ -0.43
USP28-208ENST00000540438 TEP1Q99973 2627 aaKnown RBP12.39□□□□□ -0.43
USP28-208ENST00000540438 MYMXA0A1B0GTQ4 84 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 PRSS47A8MTI9 375 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 H3BMM0 161 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 BRI3O95415 125 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 PCP4P48539 62 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 OCIAD2Q56VL3 154 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 IGLV4-69A0A075B6H9 119 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 A0A0J9YXV3 536 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 DNAJC9-AS1A6NH13 148 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 TRRAPQ9Y4A5 3859 aa12.39□□□□□ -0.43
USP28-208ENST00000540438 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.38□□□□□ -0.43
USP28-208ENST00000540438 IGKV2-29A2NJV5 120 aaPredicted RBP12.38□□□□□ -0.43
USP28-208ENST00000540438 IGIPA6NJ69 53 aa12.38□□□□□ -0.43
USP28-208ENST00000540438 H3BMG7 143 aa12.38□□□□□ -0.43
USP28-208ENST00000540438 H7C2G1 150 aa12.38□□□□□ -0.43
USP28-208ENST00000540438 FSHBP01225 129 aa12.38□□□□□ -0.43
USP28-208ENST00000540438 SYT8Q8NBV8 401 aa12.38□□□□□ -0.43
USP28-208ENST00000540438 FABP2P12104 132 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 NPC2P61916 151 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 FOXI2Q6ZQN5 318 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 CITED2Q99967 270 aaPredicted RBP12.37□□□□□ -0.43
USP28-208ENST00000540438 MAP6D1Q9H9H5 199 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 YAE1D1Q9NRH1 226 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 C12orf74Q32Q52 190 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 RAX2Q96IS3 184 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 SPXQ9BT56 116 aa12.37□□□□□ -0.43
USP28-208ENST00000540438 SIVA1O15304 175 aa12.36□□□□□ -0.43
USP28-208ENST00000540438 K7EP34 96 aa12.35□□□□□ -0.43
USP28-208ENST00000540438 NXPH4O95158 308 aa12.35□□□□□ -0.43
USP28-208ENST00000540438 PMVKQ15126 192 aa12.35□□□□□ -0.43
USP28-208ENST00000540438 NSUN5P1Q3KNT7 163 aa12.35□□□□□ -0.43
USP28-208ENST00000540438 TRAV8-3A0A0A6YYJ7 113 aa12.34□□□□□ -0.43
USP28-208ENST00000540438 TRAV12-1A0A0B4J245 112 aa12.34□□□□□ -0.43
USP28-208ENST00000540438 RPL35AP18077 110 aaKnown RBP12.34□□□□□ -0.43
USP28-208ENST00000540438 GTF2H5Q6ZYL4 71 aa12.34□□□□□ -0.43
USP28-208ENST00000540438 MED14OSP0DP75 135 aa12.34□□□□□ -0.43
USP28-208ENST00000540438 DEFB114Q30KQ6 69 aa12.34□□□□□ -0.43
USP28-208ENST00000540438 SH2D6Q7Z4S9 175 aa12.34□□□□□ -0.43
USP28-208ENST00000540438 ZNF479Q96JC4 524 aa12.34□□□□□ -0.43
USP28-208ENST00000540438 LOC107984156A0A0G2JMH3 177 aa12.33□□□□□ -0.44
USP28-208ENST00000540438 LGALS9O00182 355 aa12.33□□□□□ -0.44
USP28-208ENST00000540438 WFDC2Q14508 124 aa12.33□□□□□ -0.44
USP28-208ENST00000540438 UFSP1Q6NVU6 142 aa12.33□□□□□ -0.44
USP28-208ENST00000540438 ARL17AQ8IVW1 177 aa12.33□□□□□ -0.44
USP28-208ENST00000540438 IGLL5B9A064 214 aa12.33□□□□□ -0.44
USP28-208ENST00000540438 ANK3Q12955 4377 aaKnown RBP12.33□□□□□ -0.44
USP28-208ENST00000540438 TRBV27A0A0K0K1C4 114 aa12.32□□□□□ -0.44
USP28-208ENST00000540438 A0A0U1RRA0 63 aa12.32□□□□□ -0.44
USP28-208ENST00000540438 LINC01549A6NIU2 74 aa12.32□□□□□ -0.44
USP28-208ENST00000540438 NDUFA7O95182 113 aa12.32□□□□□ -0.44
USP28-208ENST00000540438 ODF3L2Q3SX64 289 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms