RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MRPL16Q9NX20 251 aaKnown RBP14.97□□□□□ -0.01
VPS28-209ENST00000528142 GOLT1BQ9Y3E0 138 aa14.96□□□□□ -0.01
VPS28-209ENST00000528142 C1QTNF4Q9BXJ3 329 aa14.96□□□□□ -0.01
VPS28-209ENST00000528142 TMEM263Q8WUH6 116 aaKnown RBP14.95□□□□□ -0.02
VPS28-209ENST00000528142 UQCR10Q9UDW1 63 aa14.95□□□□□ -0.02
VPS28-209ENST00000528142 IGHV3-73A0A0B4J1V6 119 aa14.94□□□□□ -0.02
VPS28-209ENST00000528142 RS1O15537 224 aa14.94□□□□□ -0.02
VPS28-209ENST00000528142 PRSS1P07477 247 aa14.94□□□□□ -0.02
VPS28-209ENST00000528142 ODF1Q14990 250 aa14.94□□□□□ -0.02
VPS28-209ENST00000528142 C2orf66Q6UXQ4 117 aa14.94□□□□□ -0.02
VPS28-209ENST00000528142 H7C1H1 209 aa14.93□□□□□ -0.02
VPS28-209ENST00000528142 ZFP2Q6ZN57 461 aa14.93□□□□□ -0.02
VPS28-209ENST00000528142 GTSCR1Q86UQ5 136 aa14.93□□□□□ -0.02
VPS28-209ENST00000528142 WFDC9Q8NEX5 89 aa14.93□□□□□ -0.02
VPS28-209ENST00000528142 KIR2DL4Q99706 377 aa14.93□□□□□ -0.02
VPS28-209ENST00000528142 DKK2Q9UBU2 259 aa14.93□□□□□ -0.02
VPS28-209ENST00000528142 HSBP1L1C9JCN9 74 aa14.92□□□□□ -0.02
VPS28-209ENST00000528142 RHODO00212 210 aa14.92□□□□□ -0.02
VPS28-209ENST00000528142 Q6ZSN1 163 aa14.92□□□□□ -0.02
VPS28-209ENST00000528142 SCGB3A1Q96QR1 104 aa14.92□□□□□ -0.02
VPS28-209ENST00000528142 ZMAT4Q9H898 229 aa14.92□□□□□ -0.02
VPS28-209ENST00000528142 PLAC8L1A1L4L8 177 aa14.91□□□□□ -0.02
VPS28-209ENST00000528142 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.91□□□□□ -0.02
VPS28-209ENST00000528142 P0DMU3 169 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 FAM231AP0DMU4 169 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 FAM231CP0DMU5 169 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 G0S2P27469 103 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 RIPPLY3P57055 190 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 DAZ2Q13117 558 aaKnown RBP14.89□□□□□ -0.03
VPS28-209ENST00000528142 DEFB104AQ8WTQ1 72 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 TRGV1A0A0A0MS02 117 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 IGHV3-53P01767 116 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 C16orf74Q96GX8 76 aa14.89□□□□□ -0.03
VPS28-209ENST00000528142 STAB1Q9NY15 2570 aa14.88□□□□□ -0.03
VPS28-209ENST00000528142 CTAG1AP78358 180 aa14.88□□□□□ -0.03
VPS28-209ENST00000528142 ERASQ7Z444 233 aa14.88□□□□□ -0.03
VPS28-209ENST00000528142 CYSLTR1Q9Y271 337 aa14.88□□□□□ -0.03
VPS28-209ENST00000528142 LINC01549A6NIU2 74 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 I3L3M4 83 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 TSHBP01222 138 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 Q6ZN92 141 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 A0A087WX48 190 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 TRAV12-1A0A0B4J245 112 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 RHOHQ15669 191 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 Q6ZTI0 123 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 Q9UF83 564 aa14.87□□□□□ -0.03
VPS28-209ENST00000528142 TRRAPQ9Y4A5 3859 aa14.86□□□□□ -0.03
VPS28-209ENST00000528142 WIPF1O43516 503 aa14.86□□□□□ -0.03
VPS28-209ENST00000528142 ANKRD39Q53RE8 183 aa14.86□□□□□ -0.03
VPS28-209ENST00000528142 STPG4Q8N801 248 aa14.86□□□□□ -0.03
VPS28-209ENST00000528142 NEXN-AS1Q8NBZ9 246 aa14.86□□□□□ -0.03
VPS28-209ENST00000528142 NOP10Q9NPE3 64 aaKnown RBP14.86□□□□□ -0.03
VPS28-209ENST00000528142 TP53TG1Q9Y2A0 90 aa14.86□□□□□ -0.03
VPS28-209ENST00000528142 IGIPA6NJ69 53 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 RRN3P1Q2M238 152 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 OR4C5Q8NGB2 326 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 SNHG12Q9BXW3 62 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 HHLA3Q9XRX5 114 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 NACAE9PAV3 2078 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 MRPL52Q86TS9 123 aaKnown RBP14.85□□□□□ -0.03
VPS28-209ENST00000528142 BAALCQ8WXS3 180 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 OVOL2Q9BRP0 275 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 MRPL35Q9NZE8 188 aaKnown RBP14.85□□□□□ -0.03
VPS28-209ENST00000528142 TNFRSF18Q9Y5U5 241 aa14.85□□□□□ -0.03
VPS28-209ENST00000528142 COL6A5A8TX70 2615 aa14.84□□□□□ -0.03
VPS28-209ENST00000528142 EREGO14944 169 aa14.84□□□□□ -0.03
VPS28-209ENST00000528142 IGKCP01834 107 aa14.84□□□□□ -0.03
VPS28-209ENST00000528142 HNRNPA3P51991 378 aaKnown RBP14.84□□□□□ -0.03
VPS28-209ENST00000528142 RPL39P62891 51 aaKnown RBP14.84□□□□□ -0.03
VPS28-209ENST00000528142 DPM2O94777 84 aa14.83□□□□□ -0.04
VPS28-209ENST00000528142 ZNF479Q96JC4 524 aa14.83□□□□□ -0.04
VPS28-209ENST00000528142 DNAJC30Q96LL9 226 aa14.83□□□□□ -0.04
VPS28-209ENST00000528142 TRAV4A0A0B4J268 109 aa14.82□□□□□ -0.04
VPS28-209ENST00000528142 M0R143 59 aa14.82□□□□□ -0.04
VPS28-209ENST00000528142 TP73-AS1Q9UF72 201 aa14.82□□□□□ -0.04
VPS28-209ENST00000528142 COX8AP10176 69 aa14.82□□□□□ -0.04
VPS28-209ENST00000528142 SLC25A34Q6PIV7 304 aa14.82□□□□□ -0.04
VPS28-209ENST00000528142 TIMM17AQ99595 171 aa14.82□□□□□ -0.04
VPS28-209ENST00000528142 MRPS16Q9Y3D3 137 aaKnown RBP14.82□□□□□ -0.04
VPS28-209ENST00000528142 C20orf203Q8NBC4 194 aa14.81□□□□□ -0.04
VPS28-209ENST00000528142 TMEM141Q96I45 108 aa14.81□□□□□ -0.04
VPS28-209ENST00000528142 F8VRH5 84 aa14.8□□□□□ -0.04
VPS28-209ENST00000528142 PRSS29PA6NIE9 313 aa14.8□□□□□ -0.04
VPS28-209ENST00000528142 LBHQ53QV2 105 aaPredicted RBP14.8□□□□□ -0.04
VPS28-209ENST00000528142 C2orf88Q9BSF0 95 aa14.79□□□□□ -0.04
VPS28-209ENST00000528142 CHTOPQ9Y3Y2 248 aaKnown RBP14.79□□□□□ -0.04
VPS28-209ENST00000528142 FGF6P10767 208 aa14.78□□□□□ -0.04
VPS28-209ENST00000528142 PLNP26678 52 aa14.78□□□□□ -0.04
VPS28-209ENST00000528142 C3orf56Q8N813 242 aa14.78□□□□□ -0.04
VPS28-209ENST00000528142 NOTCH3Q9UM47 2321 aa14.78□□□□□ -0.04
VPS28-209ENST00000528142 X6R8D5 127 aa14.78□□□□□ -0.04
VPS28-209ENST00000528142 GAGE12BA1L429 117 aa14.77□□□□□ -0.05
VPS28-209ENST00000528142 GAGE7O76087 117 aa14.77□□□□□ -0.05
VPS28-209ENST00000528142 GAGE12FP0CL80 117 aa14.77□□□□□ -0.05
VPS28-209ENST00000528142 GAGE12GP0CL81 117 aa14.77□□□□□ -0.05
VPS28-209ENST00000528142 GAGE12IP0CL82 117 aa14.77□□□□□ -0.05
VPS28-209ENST00000528142 KIR2DL5BQ8NHK3 375 aa14.77□□□□□ -0.05
VPS28-209ENST00000528142 ZC2HC1BQ5TFG8 222 aa14.76□□□□□ -0.05
VPS28-209ENST00000528142 C12orf54Q6X4T0 127 aa14.76□□□□□ -0.05
VPS28-209ENST00000528142 TRBV10-1A0A0K0K1A3 114 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms