RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 TRPT1Q86TN4 253 aaKnown RBP12.9□□□□□ -0.34
USH1C-205ENST00000527020 PRM2P04554 102 aa12.89□□□□□ -0.35
USH1C-205ENST00000527020 EMP1P54849 157 aa12.89□□□□□ -0.35
USH1C-205ENST00000527020 NSUN5P1Q3KNT7 163 aa12.89□□□□□ -0.35
USH1C-205ENST00000527020 SAMD5Q5TGI4 173 aa12.89□□□□□ -0.35
USH1C-205ENST00000527020 PEMTQ9UBM1 199 aa12.89□□□□□ -0.35
USH1C-205ENST00000527020 P0DMU3 169 aa12.88□□□□□ -0.35
USH1C-205ENST00000527020 FAM231AP0DMU4 169 aa12.88□□□□□ -0.35
USH1C-205ENST00000527020 FAM231CP0DMU5 169 aa12.88□□□□□ -0.35
USH1C-205ENST00000527020 CHD6Q8TD26 2715 aa12.88□□□□□ -0.35
USH1C-205ENST00000527020 KHDC1LQ5JSQ8 128 aa12.88□□□□□ -0.35
USH1C-205ENST00000527020 HIST1H4GQ99525 98 aa12.88□□□□□ -0.35
USH1C-205ENST00000527020 TENM4Q6N022 2769 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 NF1P21359 2839 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 CD300EQ496F6 205 aaPredicted RBP12.87□□□□□ -0.35
USH1C-205ENST00000527020 OCIAD2Q56VL3 154 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 Q6ZSV7 163 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 KLHL30-AS1Q8NEE0 82 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 SPCS1Q9Y6A9 102 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 HTN1P15515 57 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 RHOHQ15669 191 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 MAP6D1Q9H9H5 199 aa12.87□□□□□ -0.35
USH1C-205ENST00000527020 SONP18583 2426 aaKnown RBP12.86□□□□□ -0.35
USH1C-205ENST00000527020 WFDC11Q8NEX6 87 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 ZNRF2Q8NHG8 242 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 SPAG8Q99932 426 aaPredicted RBP12.86□□□□□ -0.35
USH1C-205ENST00000527020 CBY1Q9Y3M2 126 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 DEFB114Q30KQ6 69 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 C12orf74Q32Q52 190 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 PAPPA-AS1Q5QFB9 102 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 TMEM86BQ8N661 226 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 PLEKHB2Q96CS7 222 aa12.86□□□□□ -0.35
USH1C-205ENST00000527020 OPRPNQ99935 248 aaPredicted RBP12.86□□□□□ -0.35
USH1C-205ENST00000527020 ZNF815PA8K554 130 aa12.85□□□□□ -0.35
USH1C-205ENST00000527020 FABP2P12104 132 aa12.85□□□□□ -0.35
USH1C-205ENST00000527020 PROK1P58294 105 aa12.85□□□□□ -0.35
USH1C-205ENST00000527020 EDA2RQ9HAV5 297 aa12.85□□□□□ -0.35
USH1C-205ENST00000527020 CUBNO60494 3623 aa12.84□□□□□ -0.35
USH1C-205ENST00000527020 I3L3M4 83 aa12.84□□□□□ -0.35
USH1C-205ENST00000527020 C20orf203Q8NBC4 194 aa12.84□□□□□ -0.35
USH1C-205ENST00000527020 FLNAP21333 2647 aaKnown RBP12.84□□□□□ -0.35
USH1C-205ENST00000527020 IGHV3-73A0A0B4J1V6 119 aa12.83□□□□□ -0.36
USH1C-205ENST00000527020 DNAJC9-AS1A6NH13 148 aa12.83□□□□□ -0.36
USH1C-205ENST00000527020 IGLL5B9A064 214 aa12.83□□□□□ -0.36
USH1C-205ENST00000527020 OR5A1Q8NGJ0 315 aa12.83□□□□□ -0.36
USH1C-205ENST00000527020 DYNLRB2Q8TF09 96 aa12.83□□□□□ -0.36
USH1C-205ENST00000527020 A0A1B0GWB2 263 aa12.83□□□□□ -0.36
USH1C-205ENST00000527020 TSPEAR-AS2P59090 65 aa12.83□□□□□ -0.36
USH1C-205ENST00000527020 M0R2P5 195 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 RAX2Q96IS3 184 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 HERVK_113P61574 105 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 HIST2H2BCQ6DN03 193 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 NFE4Q86UQ8 179 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 C11orf72Q8NBR9 251 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 ESM1Q9NQ30 184 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 Q9UF83 564 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 PDZD2O15018 2839 aa12.81□□□□□ -0.36
USH1C-205ENST00000527020 ZNF415Q09FC8 603 aa12.8□□□□□ -0.36
USH1C-205ENST00000527020 SCGB2A2Q13296 93 aa12.8□□□□□ -0.36
USH1C-205ENST00000527020 RNF151Q2KHN1 245 aa12.8□□□□□ -0.36
USH1C-205ENST00000527020 TMEM170BQ5T4T1 132 aa12.8□□□□□ -0.36
USH1C-205ENST00000527020 Q6ZSN1 163 aa12.8□□□□□ -0.36
USH1C-205ENST00000527020 PIK3CD-AS1Q5SR53 167 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 FAM104AQ969W3 186 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 AMELXQ99217 191 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 WNK1Q9H4A3 2382 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 IGLV4-3A0A075B6K6 122 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 A8MWV9 139 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 SAP30O75446 220 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 ODF3L2Q3SX64 289 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 SCGB1D4Q6XE38 83 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 PTH2Q96A98 100 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 ZNF479Q96JC4 524 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 LINC00467Q9BRT7 94 aa12.79□□□□□ -0.36
USH1C-205ENST00000527020 A0A0J9YY99 117 aa12.78□□□□□ -0.36
USH1C-205ENST00000527020 FHL3Q13643 280 aa12.78□□□□□ -0.36
USH1C-205ENST00000527020 CFAP126Q5VTH2 177 aa12.78□□□□□ -0.36
USH1C-205ENST00000527020 C11orf44Q8N8P7 122 aa12.78□□□□□ -0.36
USH1C-205ENST00000527020 CCDC168Q8NDH2 2452 aa12.78□□□□□ -0.36
USH1C-205ENST00000527020 LINC01587Q99440 93 aa12.77□□□□□ -0.36
USH1C-205ENST00000527020 RRN3P1Q2M238 152 aa12.77□□□□□ -0.37
USH1C-205ENST00000527020 KRTAP1-1Q07627 177 aa12.76□□□□□ -0.37
USH1C-205ENST00000527020 A0A1W2PRX2 142 aa12.76□□□□□ -0.37
USH1C-205ENST00000527020 TMEM223A0PJW6 202 aa12.76□□□□□ -0.37
USH1C-205ENST00000527020 INSP01308 110 aa12.76□□□□□ -0.37
USH1C-205ENST00000527020 CD28P10747 220 aa12.76□□□□□ -0.37
USH1C-205ENST00000527020 CLUHP3Q96NS8 147 aa12.76□□□□□ -0.37
USH1C-205ENST00000527020 J3QQQ9 107 aa12.75□□□□□ -0.37
USH1C-205ENST00000527020 TEX29Q8N6K0 151 aa12.75□□□□□ -0.37
USH1C-205ENST00000527020 ANK3Q12955 4377 aaKnown RBP12.75□□□□□ -0.37
USH1C-205ENST00000527020 K7ERU9 68 aa12.74□□□□□ -0.37
USH1C-205ENST00000527020 ZNF22P17026 224 aaPredicted RBP12.74□□□□□ -0.37
USH1C-205ENST00000527020 UBE2D1P51668 147 aa12.74□□□□□ -0.37
USH1C-205ENST00000527020 BEAN1Q3B7T3 259 aa12.74□□□□□ -0.37
USH1C-205ENST00000527020 MRPL16Q9NX20 251 aaKnown RBP12.74□□□□□ -0.37
USH1C-205ENST00000527020 PYGO1Q9Y3Y4 419 aa12.74□□□□□ -0.37
USH1C-205ENST00000527020 TNFRSF18Q9Y5U5 241 aa12.74□□□□□ -0.37
USH1C-205ENST00000527020 TRAV25A0A0B4J276 109 aa12.74□□□□□ -0.37
USH1C-205ENST00000527020 A0A0J9YXV3 536 aa12.74□□□□□ -0.37
USH1C-205ENST00000527020 SRSF9Q13242 221 aaKnown RBP eCLIP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms