RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TRBV24-1A0A075B6N3 115 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 A6NED7 52 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 CPSF4LA6NMK7 179 aaKnown RBP3.02□□□□□ -1.93
CD44-220ENST00000525688 DEFB108AA8MXU0 73 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 GEMIN2O14893 280 aaKnown RBP3.02□□□□□ -1.93
CD44-220ENST00000525688 SLC25A20O43772 301 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 SH2D1AO60880 128 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 MRPL33O75394 65 aaKnown RBP3.02□□□□□ -1.93
CD44-220ENST00000525688 MT-ND6P03923 174 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 TRGV3P03979 118 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 ASAH2BP0C7U1 165 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 GZMBP10144 247 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 IFITM1P13164 125 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 SLC25A16P16260 332 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 ZNF90Q03938 601 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 LINC01545Q5VT33 79 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 MRPL54Q6P161 138 aaKnown RBP3.02□□□□□ -1.93
CD44-220ENST00000525688 ZNF705AQ6ZN79 300 aaPredicted RBP3.02□□□□□ -1.93
CD44-220ENST00000525688 C3orf56Q8N813 242 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 CLDND2Q8NHS1 167 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 COPS9Q8WXC6 57 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 ZNF714Q96N38 554 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 SCGB3A1Q96QR1 104 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 AGPAT4-IT1Q9H0P7 198 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 SLC35B3Q9H1N7 401 aa3.02□□□□□ -1.93
CD44-220ENST00000525688 LSM2Q9Y333 95 aaKnown RBP3.02□□□□□ -1.93
CD44-220ENST00000525688 MTORP42345 2549 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 ALPK2Q86TB3 2170 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 FLNAP21333 2647 aaKnown RBP3.01□□□□□ -1.93
CD44-220ENST00000525688 TRBV20-1A0A075B6N2 111 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 RPL36A-HNRNPH2H7BZ11 118 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 RER1O15258 196 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 IGHV1-69P01742 117 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 CTSDP07339 412 aaPredicted RBP3.01□□□□□ -1.93
CD44-220ENST00000525688 MDKP21741 143 aaPredicted RBP3.01□□□□□ -1.93
CD44-220ENST00000525688 UBA52P62987 128 aaKnown RBP3.01□□□□□ -1.93
CD44-220ENST00000525688 ZNF322Q6U7Q0 402 aaPredicted RBP3.01□□□□□ -1.93
CD44-220ENST00000525688 PATE2Q6UY27 113 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 SOSTDC1Q6X4U4 206 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 DEFB107AQ8IZN7 70 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 CYYR1Q96J86 154 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 GINS4Q9BRT9 223 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 PRO1933Q9H354 126 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 ZNF222Q9UK12 451 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 TMEM14AQ9Y6G1 99 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 CADP27708 2225 aa3.01□□□□□ -1.93
CD44-220ENST00000525688 A0A0D9SG52 128 aa3□□□□□ -1.93
CD44-220ENST00000525688 GRIFINA4D1Z8 144 aa3□□□□□ -1.93
CD44-220ENST00000525688 H3BMM0 161 aa3□□□□□ -1.93
CD44-220ENST00000525688 LY6HO94772 140 aa3□□□□□ -1.93
CD44-220ENST00000525688 NPYP01303 97 aa3□□□□□ -1.93
CD44-220ENST00000525688 EBI3Q14213 229 aa3□□□□□ -1.93
CD44-220ENST00000525688 MIAQ16674 131 aa3□□□□□ -1.93
CD44-220ENST00000525688 Q56UQ5 140 aa3□□□□□ -1.93
CD44-220ENST00000525688 CLLU1Q5K131 121 aa3□□□□□ -1.93
CD44-220ENST00000525688 SDIM1Q6ZPB5 146 aa3□□□□□ -1.93
CD44-220ENST00000525688 Q6ZUT4 128 aa3□□□□□ -1.93
CD44-220ENST00000525688 Q8N2B8 174 aa3□□□□□ -1.93
CD44-220ENST00000525688 SVBPQ8N300 66 aa3□□□□□ -1.93
CD44-220ENST00000525688 LINC00471Q8N535 108 aa3□□□□□ -1.93
CD44-220ENST00000525688 MIR7-3HGQ8N6C7 128 aa3□□□□□ -1.93
CD44-220ENST00000525688 PFN4Q8NHR9 129 aa3□□□□□ -1.93
CD44-220ENST00000525688 UBE2WQ96B02 151 aa3□□□□□ -1.93
CD44-220ENST00000525688 MUCL1Q96DR8 90 aa3□□□□□ -1.93
CD44-220ENST00000525688 LINC00526Q96FQ7 95 aa3□□□□□ -1.93
CD44-220ENST00000525688 SEC11CQ9BY50 192 aa3□□□□□ -1.93
CD44-220ENST00000525688 FKBP11Q9NYL4 201 aa3□□□□□ -1.93
CD44-220ENST00000525688 OR5V1Q9UGF6 321 aa3□□□□□ -1.93
CD44-220ENST00000525688 NOP16Q9Y3C1 178 aaKnown RBP3□□□□□ -1.93
CD44-220ENST00000525688 PLCE1Q9P212 2302 aa3□□□□□ -1.93
CD44-220ENST00000525688 SETD2Q9BYW2 2564 aaPredicted RBP3□□□□□ -1.93
CD44-220ENST00000525688 F8P00451 2351 aa3□□□□□ -1.93
CD44-220ENST00000525688 FBN3Q75N90 2809 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 ACANP16112 2415 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 IGLV3-9A0A075B6K5 115 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 TCRBV3S1A0A5B6 114 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 C19orf71A6NCJ1 209 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 C11orf94C9JXX5 98 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 H3BT86 120 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 PITX3O75364 302 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 RPS10P46783 165 aaKnown RBP2.99□□□□□ -1.93
CD44-220ENST00000525688 LSM3P62310 102 aaKnown RBP2.99□□□□□ -1.93
CD44-220ENST00000525688 KLRD1Q13241 179 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 C9orf153Q5TBE3 101 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 Q6AWC8 147 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 ZNF660Q6AZW8 331 aaPredicted RBP2.99□□□□□ -1.93
CD44-220ENST00000525688 SMCR5Q8TEV8 140 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 POP5Q969H6 163 aaKnown RBP2.99□□□□□ -1.93
CD44-220ENST00000525688 RBMXL1Q96E39 390 aaKnown RBP2.99□□□□□ -1.93
CD44-220ENST00000525688 LINC00574Q9H8X3 128 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 ZNF355PQ9NSJ1 428 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 SERP1Q9Y6X1 66 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 PRRC2AP48634 2157 aaKnown RBP2.99□□□□□ -1.93
CD44-220ENST00000525688 ZFHX3Q15911 3703 aa2.99□□□□□ -1.93
CD44-220ENST00000525688 NSD1Q96L73 2696 aaPredicted RBP2.98□□□□□ -1.93
CD44-220ENST00000525688 ARID1AO14497 2285 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.98□□□□□ -1.93
CD44-220ENST00000525688 TRBV6-6A0A0A6YYG2 114 aa2.98□□□□□ -1.93
CD44-220ENST00000525688 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.98□□□□□ -1.93
CD44-220ENST00000525688 IGHV1-18A0A0C4DH31 117 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms