RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 C5orf58C9J3I9 102 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 ARPC5O15511 151 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 DPM2O94777 84 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 MT-ND4LP03901 98 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 DNAJB13P59910 316 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 C10orf99Q6UWK7 81 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 C5orf17Q8NAS9 161 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 OR4S1Q8NGB4 309 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 PYDC1Q8WXC3 89 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 METTL1Q9UBP6 276 aaKnown RBP0.37□□□□□ -2.35
CD44-215ENST00000525241 CMYA5Q8N3K9 4069 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 LRP6O75581 1613 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 AKAP9Q99996 3911 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 DYNC1H1Q14204 4646 aaKnown RBP0.37□□□□□ -2.35
CD44-215ENST00000525241 TET3O43151 1660 aa0.37□□□□□ -2.35
CD44-215ENST00000525241 PHIPQ8WWQ0 1821 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 UHRF1BP1LA0JNW5 1464 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 ARHGEF10O15013 1369 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 CPDO75976 1380 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 MYH9P35579 1960 aaKnown RBP0.36□□□□□ -2.35
CD44-215ENST00000525241 MYO7AQ13402 2215 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 BORCS7-ASMTA0A0B4J1R7 106 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 A0A1W2PPB8 328 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 A0A1W2PRS3 328 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 KIR3DP1A8MWS1 328 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 EDF1O60869 148 aaKnown RBP0.36□□□□□ -2.35
CD44-215ENST00000525241 ETV6P41212 452 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 SNRPD3P62318 126 aaKnown RBP0.36□□□□□ -2.35
CD44-215ENST00000525241 HSD17B12Q53GQ0 312 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 Q6ZQY7 126 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 CCL19Q99731 98 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 COMMD3Q9UBI1 195 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 PRG4Q92954 1404 aaPredicted RBP0.36□□□□□ -2.35
CD44-215ENST00000525241 CFAP43Q8NDM7 1665 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 PARP14Q460N5 1801 aa0.36□□□□□ -2.35
CD44-215ENST00000525241 RALGAPBQ86X10 1494 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 ACACAQ13085 2346 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 WIZO95785 1651 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 TRBV30A0A0K0K1B3 111 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 CXorf51AA0A1B0GTR3 108 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 CDC42EP2O14613 210 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 OR2H2O95918 312 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 GYPBP06028 91 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 ADCYAP1P18509 176 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 AKR1D1P51857 326 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 GTF2A1P52655 376 aaPredicted RBP0.35□□□□□ -2.35
CD44-215ENST00000525241 FXYD3Q14802 87 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 TMEM244Q5VVB8 128 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 XAF1Q6GPH4 301 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 LYPD5Q6UWN5 251 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 C3orf62Q6ZUJ4 267 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 SPANXA1Q9NS26 97 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 MRPL35Q9NZE8 188 aaKnown RBP0.35□□□□□ -2.35
CD44-215ENST00000525241 FOCADQ5VW36 1801 aa0.35□□□□□ -2.35
CD44-215ENST00000525241 SYNE1Q8NF91 8797 aaKnown RBP0.35□□□□□ -2.35
CD44-215ENST00000525241 LOC107984156A0A0G2JMH3 177 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 TMEM189A5PLL7 270 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 IGKCP01834 107 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 PAEPP09466 180 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 HLA-DRB4P13762 266 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 CCDC153Q494R4 210 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 ARL17AQ8IVW1 177 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 TCTE3Q8IZS6 198 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 C5orf56Q8N8D9 126 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 PLAC4Q8WY50 150 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 LINC00208Q96KT6 92 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 SLC35B3Q9H1N7 401 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 HLA-DRB4X5D2U9 266 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 SIPA1L3O60292 1781 aaPredicted RBP0.34□□□□□ -2.36
CD44-215ENST00000525241 PKDREJQ9NTG1 2253 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 ARFGEF1Q9Y6D6 1849 aa0.34□□□□□ -2.36
CD44-215ENST00000525241 CUX1P39880 1505 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 KCPQ6ZWJ8 1503 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 MYH7P12883 1935 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 OVOS2A0A0J9YW53 1432 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 OVOS2Q6IE36 1432 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 IGHV1-24A0A0C4DH33 117 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 LOC101927531A0A1B0GV80 90 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 PRH1P02810 166 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 TSPAN19P0C672 248 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 HIST1H1BP16401 226 aaKnown RBP0.33□□□□□ -2.36
CD44-215ENST00000525241 CKS2P33552 79 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 PSPHP78330 225 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 RHOHQ15669 191 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 GLYATL3Q5SZD4 288 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 DMAC1Q96GE9 116 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 AP1S3Q96PC3 154 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 BANF2Q9H503 90 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 SPANXCQ9NY87 97 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 BOKQ9UMX3 212 aaPredicted RBP0.33□□□□□ -2.36
CD44-215ENST00000525241 MADDQ8WXG6 1647 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 ABCC10Q5T3U5 1492 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 CHD1O14646 1710 aa0.33□□□□□ -2.36
CD44-215ENST00000525241 TNS1Q9HBL0 1735 aaKnown RBP0.33□□□□□ -2.36
CD44-215ENST00000525241 DNAH9Q9NYC9 4486 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 DIP2AQ14689 1571 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 FHAD1B1AJZ9 1412 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 KIF21BO75037 1637 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 PNMA8CA0A1B0GUJ8 204 aa0.32□□□□□ -2.36
CD44-215ENST00000525241 TMEM30CPA0ZSE6 113 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms