RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MT-ND4LP03901 98 aa9.77□□□□□ -0.85
NUP54-216ENST00000514901 BTF3P20290 206 aaKnown RBP9.77□□□□□ -0.85
NUP54-216ENST00000514901 UBE2D3P61077 147 aa9.77□□□□□ -0.85
NUP54-216ENST00000514901 UBE2D2P62837 147 aa9.77□□□□□ -0.85
NUP54-216ENST00000514901 NEXN-AS1Q8NBZ9 246 aa9.77□□□□□ -0.85
NUP54-216ENST00000514901 ANAPC16Q96DE5 110 aa9.77□□□□□ -0.85
NUP54-216ENST00000514901 DNAH10Q8IVF4 4471 aa9.76□□□□□ -0.85
NUP54-216ENST00000514901 F8W036 122 aa9.76□□□□□ -0.85
NUP54-216ENST00000514901 OR10J3Q5JRS4 329 aa9.76□□□□□ -0.85
NUP54-216ENST00000514901 SUMO4Q6EEV6 95 aa9.76□□□□□ -0.85
NUP54-216ENST00000514901 FRZBQ92765 325 aa9.76□□□□□ -0.85
NUP54-216ENST00000514901 SEC11CQ9BY50 192 aa9.76□□□□□ -0.85
NUP54-216ENST00000514901 TNFRSF18Q9Y5U5 241 aa9.76□□□□□ -0.85
NUP54-216ENST00000514901 A0A1B0GW15 77 aa9.75□□□□□ -0.85
NUP54-216ENST00000514901 RASL11AQ6T310 242 aa9.75□□□□□ -0.85
NUP54-216ENST00000514901 DAZ4Q86SG3 579 aaKnown RBP9.75□□□□□ -0.85
NUP54-216ENST00000514901 TMEM191AQ9H0A3 160 aa9.75□□□□□ -0.85
NUP54-216ENST00000514901 DAZ3Q9NR90 486 aaKnown RBP9.75□□□□□ -0.85
NUP54-216ENST00000514901 DNAH10OSP0CZ25 163 aa9.74□□□□□ -0.85
NUP54-216ENST00000514901 TMEM97Q5BJF2 176 aa9.74□□□□□ -0.85
NUP54-216ENST00000514901 C1orf134Q5TEV5 83 aa9.74□□□□□ -0.85
NUP54-216ENST00000514901 NIT2Q9NQR4 276 aa9.74□□□□□ -0.85
NUP54-216ENST00000514901 FRAS1Q86XX4 4008 aa9.73□□□□□ -0.85
NUP54-216ENST00000514901 IGHV3-38A0A0C4DH36 116 aa9.73□□□□□ -0.85
NUP54-216ENST00000514901 S100A8P05109 93 aa9.73□□□□□ -0.85
NUP54-216ENST00000514901 WFDC10BQ8IUB3 73 aa9.73□□□□□ -0.85
NUP54-216ENST00000514901 C10orf126Q8N4M7 172 aa9.73□□□□□ -0.85
NUP54-216ENST00000514901 ADCYAP1P18509 176 aa9.72□□□□□ -0.85
NUP54-216ENST00000514901 LINC01556Q5JQF7 62 aa9.72□□□□□ -0.85
NUP54-216ENST00000514901 LINC00336Q6ZUF6 198 aa9.72□□□□□ -0.85
NUP54-216ENST00000514901 C6orf223Q8N319 242 aa9.72□□□□□ -0.85
NUP54-216ENST00000514901 DNAH2Q9P225 4427 aa9.72□□□□□ -0.85
NUP54-216ENST00000514901 GATD1Q8NB37 220 aa9.71□□□□□ -0.86
NUP54-216ENST00000514901 TRBV6-8A0A0A6YYG3 113 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 RAB4AP20338 218 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 C10orf91Q5T1B1 145 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 KCNIP4Q6PIL6 250 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 ATP5L2Q7Z4Y8 100 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 MRAP2Q96G30 205 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 IMMP2LQ96T52 175 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 CTDSP1Q9GZU7 261 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 DNAH17Q9UFH2 4485 aa9.7□□□□□ -0.86
NUP54-216ENST00000514901 TRAV26-2A0A0B4J265 109 aa9.69□□□□□ -0.86
NUP54-216ENST00000514901 PPP1R17O96001 155 aa9.69□□□□□ -0.86
NUP54-216ENST00000514901 CAMPP49913 170 aa9.69□□□□□ -0.86
NUP54-216ENST00000514901 PKIAP61925 76 aa9.69□□□□□ -0.86
NUP54-216ENST00000514901 HBBP68871 147 aa9.69□□□□□ -0.86
NUP54-216ENST00000514901 RNF185Q96GF1 192 aa9.69□□□□□ -0.86
NUP54-216ENST00000514901 KRTAP1-5Q9BYS1 174 aa9.69□□□□□ -0.86
NUP54-216ENST00000514901 RTL8CO15255 209 aa9.68□□□□□ -0.86
NUP54-216ENST00000514901 FAM104BQ5XKR9 115 aa9.68□□□□□ -0.86
NUP54-216ENST00000514901 NFE4Q86UQ8 179 aa9.68□□□□□ -0.86
NUP54-216ENST00000514901 AMN1Q8IY45 258 aa9.68□□□□□ -0.86
NUP54-216ENST00000514901 CHCHD7Q9BUK0 85 aa9.68□□□□□ -0.86
NUP54-216ENST00000514901 CARHSP1Q9Y2V2 147 aaKnown RBP9.68□□□□□ -0.86
NUP54-216ENST00000514901 URGCP-MRPS24S4R325 110 aa9.68□□□□□ -0.86
NUP54-216ENST00000514901 TRBV6-5A0A0K0K1A5 114 aa9.67□□□□□ -0.86
NUP54-216ENST00000514901 A0A1B0GXF2 115 aa9.67□□□□□ -0.86
NUP54-216ENST00000514901 MRPL54Q6P161 138 aaKnown RBP9.67□□□□□ -0.86
NUP54-216ENST00000514901 NIT1Q86X76 327 aa9.67□□□□□ -0.86
NUP54-216ENST00000514901 BTF3L4Q96K17 158 aa9.67□□□□□ -0.86
NUP54-216ENST00000514901 TRBV25-1A0A075B6N4 114 aa9.66□□□□□ -0.86
NUP54-216ENST00000514901 IGHV1-24A0A0C4DH33 117 aa9.66□□□□□ -0.86
NUP54-216ENST00000514901 IBA57-AS1B1ANH7 110 aa9.66□□□□□ -0.86
NUP54-216ENST00000514901 IQCJQ1A5X6 159 aa9.66□□□□□ -0.86
NUP54-216ENST00000514901 RPL39LQ96EH5 51 aaKnown RBP9.66□□□□□ -0.86
NUP54-216ENST00000514901 TMEM242Q9NWH2 141 aa9.66□□□□□ -0.86
NUP54-216ENST00000514901 A0A087WX48 190 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 PRSS29PA6NIE9 313 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 TMEM262E9PQX1 116 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 IGHV3-30P01768 117 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 IGHV3-33P01772 117 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 IGHV3-30-3P0DP02 117 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 IGHV3-30-5P0DP03 117 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 COTL1Q14019 142 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 ELOBQ15370 118 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 NDUFA5Q16718 116 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 NTM-AS1Q6ZSK4 140 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 CHCHD5Q9BSY4 110 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 ST20Q9HBF5 79 aa9.65□□□□□ -0.86
NUP54-216ENST00000514901 FAT2Q9NYQ8 4349 aa9.65□□□□□ -0.87
NUP54-216ENST00000514901 TRAV9-1A0A075B6T8 112 aa9.64□□□□□ -0.87
NUP54-216ENST00000514901 SDHAF1A6NFY7 115 aa9.64□□□□□ -0.87
NUP54-216ENST00000514901 NCR2O95944 276 aa9.64□□□□□ -0.87
NUP54-216ENST00000514901 LAGE3Q14657 143 aa9.64□□□□□ -0.87
NUP54-216ENST00000514901 RHEBQ15382 184 aa9.64□□□□□ -0.87
NUP54-216ENST00000514901 MRPL51Q4U2R6 128 aaKnown RBP9.64□□□□□ -0.87
NUP54-216ENST00000514901 CLRN3Q8NCR9 226 aa9.64□□□□□ -0.87
NUP54-216ENST00000514901 C7orf77A4D0Y5 90 aa9.63□□□□□ -0.87
NUP54-216ENST00000514901 I3L3M4 83 aa9.63□□□□□ -0.87
NUP54-216ENST00000514901 PPBPP02775 128 aa9.63□□□□□ -0.87
NUP54-216ENST00000514901 S100PP25815 95 aa9.63□□□□□ -0.87
NUP54-216ENST00000514901 CKS2P33552 79 aa9.63□□□□□ -0.87
NUP54-216ENST00000514901 TMEM243Q9BU79 118 aa9.63□□□□□ -0.87
NUP54-216ENST00000514901 TRAV8-3A0A0A6YYJ7 113 aa9.62□□□□□ -0.87
NUP54-216ENST00000514901 PMCHP20382 165 aa9.62□□□□□ -0.87
NUP54-216ENST00000514901 SVBPQ8N300 66 aa9.62□□□□□ -0.87
NUP54-216ENST00000514901 TRBV24-1A0A075B6N3 115 aa9.61□□□□□ -0.87
NUP54-216ENST00000514901 VCYO14598 125 aa9.61□□□□□ -0.87
NUP54-216ENST00000514901 GAS8-AS1O95177 125 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms