RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 C18orf15Q96N68 181 aa11.46□□□□□ -0.57
NUP54-214ENST00000514307 TEX48A0A1B0GUV7 120 aa11.45□□□□□ -0.58
NUP54-214ENST00000514307 IFITM10A6NMD0 228 aa11.45□□□□□ -0.58
NUP54-214ENST00000514307 LAGE3Q14657 143 aa11.45□□□□□ -0.58
NUP54-214ENST00000514307 DEFB121Q5J5C9 76 aa11.45□□□□□ -0.58
NUP54-214ENST00000514307 FAM19A2Q8N3H0 131 aa11.45□□□□□ -0.58
NUP54-214ENST00000514307 RPL39LQ96EH5 51 aaKnown RBP11.45□□□□□ -0.58
NUP54-214ENST00000514307 SMIM2Q9BVW6 85 aa11.45□□□□□ -0.58
NUP54-214ENST00000514307 SPART-AS1P0CW21 52 aa11.44□□□□□ -0.58
NUP54-214ENST00000514307 ORMDL2Q53FV1 153 aa11.44□□□□□ -0.58
NUP54-214ENST00000514307 KIR2DL4Q99706 377 aa11.44□□□□□ -0.58
NUP54-214ENST00000514307 HSPB8Q9UJY1 196 aa11.44□□□□□ -0.58
NUP54-214ENST00000514307 TRGV4A0A0C4DH28 118 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 IGHV4-28A0A0C4DH34 117 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 TRBV10-1A0A0K0K1A3 114 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 LINC01549A6NIU2 74 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 DEFB130BP0DP73 79 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 DEFB130AP0DP74 79 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 FCER1GP30273 86 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 POLR2KP53803 58 aaKnown RBP11.43□□□□□ -0.58
NUP54-214ENST00000514307 LINC00612Q8N6U2 182 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 ZNF479Q96JC4 524 aa11.43□□□□□ -0.58
NUP54-214ENST00000514307 NBEAL1Q6ZS30 2694 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 IGLV2-18A0A075B6J9 118 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 IGHV1-24A0A0C4DH33 117 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 TRBV27A0A0K0K1C4 114 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 SDHAF1A6NFY7 115 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 LEPROTL1O95214 131 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 TMEM70Q9BUB7 260 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 MUC4Q99102 2169 aa11.42□□□□□ -0.58
NUP54-214ENST00000514307 TRBV6-4A0A1B0GX49 114 aa11.41□□□□□ -0.58
NUP54-214ENST00000514307 I3L3M4 83 aa11.41□□□□□ -0.58
NUP54-214ENST00000514307 HBDP02042 147 aa11.41□□□□□ -0.58
NUP54-214ENST00000514307 FAM222AQ5U5X8 452 aa11.41□□□□□ -0.58
NUP54-214ENST00000514307 Q8NAQ8 132 aa11.41□□□□□ -0.58
NUP54-214ENST00000514307 DKK2Q9UBU2 259 aa11.41□□□□□ -0.58
NUP54-214ENST00000514307 NUDT3O95989 172 aa11.4□□□□□ -0.58
NUP54-214ENST00000514307 RPL36AP83881 106 aaKnown RBP11.4□□□□□ -0.58
NUP54-214ENST00000514307 Q6ZSN1 163 aa11.4□□□□□ -0.58
NUP54-214ENST00000514307 RPL36ALQ969Q0 106 aaKnown RBP11.4□□□□□ -0.58
NUP54-214ENST00000514307 PRADC1Q9BSG0 188 aa11.4□□□□□ -0.58
NUP54-214ENST00000514307 DAD1P61803 113 aa11.39□□□□□ -0.59
NUP54-214ENST00000514307 MAP1LC3CQ9BXW4 147 aa11.39□□□□□ -0.59
NUP54-214ENST00000514307 K7EIL1 84 aa11.38□□□□□ -0.59
NUP54-214ENST00000514307 K7EQD1 137 aa11.38□□□□□ -0.59
NUP54-214ENST00000514307 FHL2Q14192 279 aa11.38□□□□□ -0.59
NUP54-214ENST00000514307 PMCHL1Q16048 86 aa11.38□□□□□ -0.59
NUP54-214ENST00000514307 SPATA25Q9BR10 227 aa11.38□□□□□ -0.59
NUP54-214ENST00000514307 HHLA3Q9XRX5 114 aa11.38□□□□□ -0.59
NUP54-214ENST00000514307 TRBV7-3A0A075B6L6 115 aa11.37□□□□□ -0.59
NUP54-214ENST00000514307 BTF3P20290 206 aaKnown RBP11.37□□□□□ -0.59
NUP54-214ENST00000514307 KRTDAPP60985 99 aa11.37□□□□□ -0.59
NUP54-214ENST00000514307 JOSD1Q15040 202 aaPredicted RBP11.37□□□□□ -0.59
NUP54-214ENST00000514307 SLC25A29Q8N8R3 303 aa11.37□□□□□ -0.59
NUP54-214ENST00000514307 NEXN-AS1Q8NBZ9 246 aa11.37□□□□□ -0.59
NUP54-214ENST00000514307 DEFB4AO15263 64 aa11.36□□□□□ -0.59
NUP54-214ENST00000514307 ATP5LO75964 103 aa11.36□□□□□ -0.59
NUP54-214ENST00000514307 SCGB1D1O95968 90 aa11.36□□□□□ -0.59
NUP54-214ENST00000514307 SMIM6P0DI80 62 aa11.36□□□□□ -0.59
NUP54-214ENST00000514307 RHOHQ15669 191 aa11.36□□□□□ -0.59
NUP54-214ENST00000514307 DAZ4Q86SG3 579 aaKnown RBP11.36□□□□□ -0.59
NUP54-214ENST00000514307 ZNRF2Q8NHG8 242 aa11.36□□□□□ -0.59
NUP54-214ENST00000514307 DAZ3Q9NR90 486 aaKnown RBP11.36□□□□□ -0.59
NUP54-214ENST00000514307 PRB2P02812 416 aaPredicted RBP11.35□□□□□ -0.59
NUP54-214ENST00000514307 ATP5G1P05496 136 aa11.35□□□□□ -0.59
NUP54-214ENST00000514307 SBSPONQ8IVN8 264 aa11.35□□□□□ -0.59
NUP54-214ENST00000514307 PRO0255Q9UI72 69 aa11.35□□□□□ -0.59
NUP54-214ENST00000514307 P0DMU3 169 aa11.34□□□□□ -0.59
NUP54-214ENST00000514307 FAM231AP0DMU4 169 aa11.34□□□□□ -0.59
NUP54-214ENST00000514307 FAM231CP0DMU5 169 aa11.34□□□□□ -0.59
NUP54-214ENST00000514307 PET117Q6UWS5 81 aa11.34□□□□□ -0.59
NUP54-214ENST00000514307 C11orf68Q9H3H3 251 aaKnown RBP11.34□□□□□ -0.59
NUP54-214ENST00000514307 ZMAT4Q9H898 229 aa11.34□□□□□ -0.59
NUP54-214ENST00000514307 CYSLTR1Q9Y271 337 aa11.34□□□□□ -0.59
NUP54-214ENST00000514307 C20orf202A1L168 122 aa11.33□□□□□ -0.6
NUP54-214ENST00000514307 C3orf79P0CE67 100 aa11.33□□□□□ -0.6
NUP54-214ENST00000514307 COTL1Q14019 142 aa11.33□□□□□ -0.6
NUP54-214ENST00000514307 TOMM6Q96B49 74 aa11.33□□□□□ -0.6
NUP54-214ENST00000514307 MGAM2Q2M2H8 2515 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.32□□□□□ -0.6
NUP54-214ENST00000514307 TMEM97Q5BJF2 176 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 NEGR1Q7Z3B1 354 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 SPATA12Q7Z6I5 190 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 LINC00518Q8N0U6 118 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 IFI27L1Q96BM0 104 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 SCGB3A1Q96QR1 104 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 TM2D3Q9BRN9 247 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 TRRAPQ9Y4A5 3859 aa11.32□□□□□ -0.6
NUP54-214ENST00000514307 A0A096LNJ9 63 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 GAGE12JA6NER3 117 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 SYS1-DBNDD2H3BUS1 97 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 PAX4O43316 350 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 TSHBP01222 138 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 PRSS1P07477 247 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 CRYBA4P53673 196 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 SMAGPQ0VAQ4 97 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 GAGE1Q13065 139 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 GAGE4Q13068 117 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 GAGE5Q13069 117 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 GAGE13Q4V321 117 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms