RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 IGHV1-24A0A0C4DH33 117 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 DUSP14O95147 198 aaKnown RBP5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 IL15RAQ13261 267 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 LTAP01374 205 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 CENPWQ5EE01 88 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 AMN1Q8IY45 258 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 TMEM61Q8N0U2 210 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 C20orf173Q96LM9 149 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 ZMAT4Q9H898 229 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 PYGO1Q9Y3Y4 419 aa5.96□□□□□ -1.46
LIMCH1-219ENST00000514096 C15orf61A6NNL5 157 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 SERF2P84101 59 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 C9orf66Q5T8R8 295 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 CCDC140Q96MF4 163 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 SMAD5-AS1Q9Y6J3 95 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 CRYM-AS1A6NIL9 109 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 IGLV1-40P01703 118 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 RRN3P1Q2M238 152 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 PGLYRP4Q96LB8 373 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 C16orf92Q96LL3 132 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 CRYGBP07316 175 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 MRGPRG-AS1Q2M3A8 158 aa5.95□□□□□ -1.46
LIMCH1-219ENST00000514096 A8MZ25 164 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 NPIPB6E9PJ23 425 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 NCR2O95944 276 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 INAFM2P0DMQ5 153 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 UBE2L3P68036 154 aaKnown RBP5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 MPLKIPQ8TAP9 179 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 E9PLD3 99 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 H3BS24 57 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 J3QQQ9 107 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 UQCRQO14949 82 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 ARL14EPLP0DKL9 152 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 GCHFRP30047 84 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 Q6ZS49 121 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 RNF5Q99942 180 aa5.94□□□□□ -1.46
LIMCH1-219ENST00000514096 PGPA6NDG6 321 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 SUB1P53999 127 aaKnown RBP eCLIP5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 C6orf226Q5I0X4 101 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 LHFPL1Q86WI0 220 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 NUP35Q8NFH5 326 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 RHPN1-AS1Q9BWJ2 59 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 NDUFA4L2Q9NRX3 87 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 SLC25A20O43772 301 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 NDUFC2O95298 119 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 CEMP1Q6PRD7 247 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 COL7A1Q02388 2944 aa5.93□□□□□ -1.46
LIMCH1-219ENST00000514096 TRBV20OR9-2A0A075B6H5 130 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 SYNGR2O43760 224 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 ARL16Q0P5N6 197 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 DEFB135Q30KP9 77 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 TCRAP04437 139 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 IGHV4-30-4P0DP06 118 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 BEAN1Q3B7T3 259 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 SBSPONQ8IVN8 264 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 HHLA3Q9XRX5 114 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 DPM2O94777 84 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 CFHR3Q02985 330 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 ATP5L2Q7Z4Y8 100 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 USMG5Q96IX5 58 aa5.92□□□□□ -1.46
LIMCH1-219ENST00000514096 PRSS46E5RG02 174 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 K7EIM0 57 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 PRCDQ00LT1 54 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 IGLV11-55A0A075B6I3 123 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 HIGD1CA8MV81 97 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 DEFB131AP59861 70 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 PMAIP1Q13794 54 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 MRPL53Q96EL3 112 aaKnown RBP5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 KNCNA6PVL3 124 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 SPRY2O43597 315 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 IGKCP01834 107 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 TMEM14BQ9NUH8 114 aa5.91□□□□□ -1.46
LIMCH1-219ENST00000514096 TRAV12-3A0A0B4J271 114 aa5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 TEX49A0A1B0GTD5 131 aa5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 RNASE2P10153 161 aaKnown RBP5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 EIF4EBP1Q13541 118 aaPredicted RBP5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 TMEM170BQ5T4T1 132 aa5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 LINC01561Q8N1V8 128 aa5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 DPH3Q96FX2 82 aa5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 PRKDCP78527 4128 aaKnown RBP5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 ANK2Q01484 3957 aa5.9□□□□□ -1.46
LIMCH1-219ENST00000514096 CTSGP08311 255 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 HTN3P15516 51 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 OTORQ9NRC9 128 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 DKK2Q9UBU2 259 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 TRBV25-1A0A075B6N4 114 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 A0A1B0GX51 115 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 FAM223BA6NKX1 122 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 FAM90A26D6RGX4 464 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 F6UB75 175 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 HLA-DRB4P13762 266 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 PSMG4Q5JS54 123 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 FAM223AQ8IWN6 122 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 MYOZ3Q8TDC0 251 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 WIPF2Q8TF74 440 aaPredicted RBP5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 HLA-DRB4X5D2U9 266 aa5.9□□□□□ -1.47
LIMCH1-219ENST00000514096 MUC4Q99102 2169 aa5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 H3BMM0 161 aa5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 CFAP126Q5VTH2 177 aa5.89□□□□□ -1.47
LIMCH1-219ENST00000514096 MRPL32Q9BYC8 188 aaKnown RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms