RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ATP6V0E2Q8NHE4 81 aa10.38□□□□□ -0.75
NUP54-213ENST00000513352 TNFRSF18Q9Y5U5 241 aa10.38□□□□□ -0.75
NUP54-213ENST00000513352 STARD9Q9P2P6 4700 aa10.38□□□□□ -0.75
NUP54-213ENST00000513352 M0QY20 66 aa10.37□□□□□ -0.75
NUP54-213ENST00000513352 RAB4AP20338 218 aa10.37□□□□□ -0.75
NUP54-213ENST00000513352 GATD1Q8NB37 220 aa10.37□□□□□ -0.75
NUP54-213ENST00000513352 RNF185Q96GF1 192 aa10.37□□□□□ -0.75
NUP54-213ENST00000513352 TRBV7-3A0A075B6L6 115 aa10.36□□□□□ -0.75
NUP54-213ENST00000513352 NCR2O95944 276 aa10.36□□□□□ -0.75
NUP54-213ENST00000513352 FAM104BQ5XKR9 115 aa10.36□□□□□ -0.75
NUP54-213ENST00000513352 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.36□□□□□ -0.75
NUP54-213ENST00000513352 LINC00476Q8WZB0 136 aa10.36□□□□□ -0.75
NUP54-213ENST00000513352 MRAP2Q96G30 205 aa10.36□□□□□ -0.75
NUP54-213ENST00000513352 SMKR1H3BMG3 65 aa10.35□□□□□ -0.75
NUP54-213ENST00000513352 ESRGQ1W209 222 aa10.35□□□□□ -0.75
NUP54-213ENST00000513352 MRPL51Q4U2R6 128 aaKnown RBP10.35□□□□□ -0.75
NUP54-213ENST00000513352 OR10J3Q5JRS4 329 aa10.35□□□□□ -0.75
NUP54-213ENST00000513352 RPL39LQ96EH5 51 aaKnown RBP10.35□□□□□ -0.75
NUP54-213ENST00000513352 NIT2Q9NQR4 276 aa10.35□□□□□ -0.75
NUP54-213ENST00000513352 TGIF2-C20orf24A0A0A6YYL0 155 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 IGHV3-38A0A0C4DH36 116 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 CKS2P33552 79 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 UBE2D3P61077 147 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 UBE2D2P62837 147 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 LGALS9CQ6DKI2 356 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 LYPD5Q6UWN5 251 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 CBLN2Q8IUK8 224 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 DNAJC30Q96LL9 226 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 LINC00588Q9Y4M8 146 aa10.34□□□□□ -0.75
NUP54-213ENST00000513352 LINC00694P0DN24 101 aa10.33□□□□□ -0.76
NUP54-213ENST00000513352 FRZBQ92765 325 aa10.33□□□□□ -0.76
NUP54-213ENST00000513352 GTSF1LQ9H1H1 148 aa10.33□□□□□ -0.76
NUP54-213ENST00000513352 SMCO4Q9NRQ5 59 aa10.33□□□□□ -0.76
NUP54-213ENST00000513352 D6R8Y8 96 aa10.32□□□□□ -0.76
NUP54-213ENST00000513352 GAS8-AS1O95177 125 aa10.32□□□□□ -0.76
NUP54-213ENST00000513352 ELOBQ15370 118 aa10.32□□□□□ -0.76
NUP54-213ENST00000513352 TMEM136Q6ZRR5 245 aa10.32□□□□□ -0.76
NUP54-213ENST00000513352 MRPS16Q9Y3D3 137 aaKnown RBP10.32□□□□□ -0.76
NUP54-213ENST00000513352 LCE6AA0A183 80 aa10.31□□□□□ -0.76
NUP54-213ENST00000513352 RPS10P46783 165 aaKnown RBP10.31□□□□□ -0.76
NUP54-213ENST00000513352 DAZ4Q86SG3 579 aaKnown RBP10.31□□□□□ -0.76
NUP54-213ENST00000513352 ST20Q9HBF5 79 aa10.31□□□□□ -0.76
NUP54-213ENST00000513352 DAZ3Q9NR90 486 aaKnown RBP10.31□□□□□ -0.76
NUP54-213ENST00000513352 DYNC2H1Q8NCM8 4307 aaKnown RBP10.31□□□□□ -0.76
NUP54-213ENST00000513352 ATP6V1G1O75348 118 aa10.3□□□□□ -0.76
NUP54-213ENST00000513352 PPP1R17O96001 155 aa10.3□□□□□ -0.76
NUP54-213ENST00000513352 HLA-DQA1P01909 254 aa10.3□□□□□ -0.76
NUP54-213ENST00000513352 APCSP02743 223 aa10.3□□□□□ -0.76
NUP54-213ENST00000513352 COX19Q49B96 90 aa10.3□□□□□ -0.76
NUP54-213ENST00000513352 DEFB104AQ8WTQ1 72 aa10.3□□□□□ -0.76
NUP54-213ENST00000513352 TRAV8-6A0A0B4J262 113 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 SDHAF1A6NFY7 115 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 PPBPP02775 128 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 TIRAPP58753 221 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 LELP1Q5T871 98 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 ORMDL3Q8N138 153 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 PRELID3AQ96N28 172 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 GNB1LQ9BYB4 327 aa10.29□□□□□ -0.76
NUP54-213ENST00000513352 IGLV2-18A0A075B6J9 118 aa10.28□□□□□ -0.76
NUP54-213ENST00000513352 TRBV24-1A0A075B6N3 115 aa10.28□□□□□ -0.76
NUP54-213ENST00000513352 MT-ND6P03923 174 aa10.28□□□□□ -0.76
NUP54-213ENST00000513352 PMCHP20382 165 aa10.28□□□□□ -0.76
NUP54-213ENST00000513352 COTL1Q14019 142 aa10.28□□□□□ -0.76
NUP54-213ENST00000513352 KIAA1644Q3SXP7 199 aa10.28□□□□□ -0.76
NUP54-213ENST00000513352 NRACQ8N912 160 aa10.28□□□□□ -0.76
NUP54-213ENST00000513352 TRBV6-5A0A0K0K1A5 114 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 SCO1O75880 301 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 TNFRSF6BO95407 300 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 NPYP01303 97 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 S100A1P23297 94 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 FABP9Q0Z7S8 132 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 TMEM97Q5BJF2 176 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 WFDC10BQ8IUB3 73 aa10.27□□□□□ -0.77
NUP54-213ENST00000513352 MRPL18Q9H0U6 180 aaKnown RBP10.27□□□□□ -0.77
NUP54-213ENST00000513352 TRBV6-8A0A0A6YYG3 113 aa10.26□□□□□ -0.77
NUP54-213ENST00000513352 SIVA1O15304 175 aa10.26□□□□□ -0.77
NUP54-213ENST00000513352 SUMO2P61956 95 aaKnown RBP10.26□□□□□ -0.77
NUP54-213ENST00000513352 UPK3BQ9BT76 320 aa10.26□□□□□ -0.77
NUP54-213ENST00000513352 TMEM70Q9BUB7 260 aa10.26□□□□□ -0.77
NUP54-213ENST00000513352 Q9H8V8 135 aa10.26□□□□□ -0.77
NUP54-213ENST00000513352 TRAPPC1Q9Y5R8 145 aa10.26□□□□□ -0.77
NUP54-213ENST00000513352 TRBV25-1A0A075B6N4 114 aa10.25□□□□□ -0.77
NUP54-213ENST00000513352 IGHV1-24A0A0C4DH33 117 aa10.25□□□□□ -0.77
NUP54-213ENST00000513352 AMTP48728 403 aa10.25□□□□□ -0.77
NUP54-213ENST00000513352 YPEL4Q96NS1 127 aa10.25□□□□□ -0.77
NUP54-213ENST00000513352 CHCHD5Q9BSY4 110 aa10.25□□□□□ -0.77
NUP54-213ENST00000513352 PLECQ15149 4684 aaKnown RBP10.25□□□□□ -0.77
NUP54-213ENST00000513352 I3L3M4 83 aa10.24□□□□□ -0.77
NUP54-213ENST00000513352 M0R2N4 97 aa10.24□□□□□ -0.77
NUP54-213ENST00000513352 PHOX2AO14813 284 aa10.24□□□□□ -0.77
NUP54-213ENST00000513352 FCER1GP30273 86 aa10.24□□□□□ -0.77
NUP54-213ENST00000513352 NTM-AS1Q6ZSK4 140 aa10.24□□□□□ -0.77
NUP54-213ENST00000513352 C20orf78Q9BR46 151 aa10.24□□□□□ -0.77
NUP54-213ENST00000513352 ALMS1Q8TCU4 4167 aa10.24□□□□□ -0.77
NUP54-213ENST00000513352 LOC389332A0A1B0GUA5 103 aa10.23□□□□□ -0.77
NUP54-213ENST00000513352 TMEM262E9PQX1 116 aa10.23□□□□□ -0.77
NUP54-213ENST00000513352 VCYO14598 125 aa10.23□□□□□ -0.77
NUP54-213ENST00000513352 KIR2DL4Q99706 377 aa10.23□□□□□ -0.77
NUP54-213ENST00000513352 TMEM243Q9BU79 118 aa10.23□□□□□ -0.77
NUP54-213ENST00000513352 SMIM2Q9BVW6 85 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms