RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 FOXE3Q13461 319 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 MAST4O15021 2626 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 MGAM2Q2M2H8 2515 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 A0A0U1RRA0 63 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 C5orf56Q8N8D9 126 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 C8orf31Q8N9H6 132 aa8.25□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 J3KT08 172 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TMEM190Q8WZ59 177 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 COL27A1Q8IZC6 1860 aaPredicted RBP8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 SUMO2P61956 95 aaKnown RBP8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 SNRPD3P62318 126 aaKnown RBP8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 C5orf47Q569G3 176 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CFAP126Q5VTH2 177 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TRAV4A0A0B4J268 109 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 SPINK13Q1W4C9 94 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 UBE2E2Q96LR5 201 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 FAM110AQ9BQ89 295 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 SMIM2Q9BVW6 85 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 KLK9Q9UKQ9 250 aa8.24□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 A0A087WWL8 130 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 KNCNA6PVL3 124 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 M0QXV9 152 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TRPT1Q86TN4 253 aaKnown RBP8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CARD19Q96LW7 228 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CHCHD5Q9BSY4 110 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TMEM14CQ9P0S9 112 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 ODF3BA8MYP8 253 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 LY6LH3BQJ8 138 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 J3QKU1 62 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 LINC01620Q4KN68 170 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 NPBQ8NG41 125 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TRBV7-1A0A0A6YYK4 115 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TRACP01848 142 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 LGALS1P09382 135 aaKnown RBP8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 PDE6HQ13956 83 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 AJUBAQ96IF1 538 aa8.23□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 UBR5O95071 2799 aaPredicted RBP8.22□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 EDN2P20800 178 aa8.22□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 Q8N1Y9 231 aa8.22□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 SLC50A1Q9BRV3 221 aa8.22□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 IGF1P05019 195 aa8.22□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 DPH3P1Q9H4G8 78 aa8.22□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 IGKV3OR2-268A0A0C4DH90 116 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 A4D1N5 150 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 DEFB113Q30KQ7 82 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 PLEKHB2Q96CS7 222 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CCDC140Q96MF4 163 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 AGPAT4-IT1Q9H0P7 198 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 DAZ1Q9NQZ3 744 aaKnown RBP8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 TP53TG1Q9Y2A0 90 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 J3QQQ9 107 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 RHODO00212 210 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 CRYGBP07316 175 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 SLURP1P55000 103 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 Q6ZQT7 251 aa8.21□□□□□ -1.09
MSH5-SAPCD1-207ENST00000493662 RS1O15537 224 aa8.21□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 DEFB131AP59861 70 aa8.21□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 ZNF493Q6ZR52 646 aa8.21□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 CRYGCP07315 174 aa8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 HIST1H4AP62805 103 aaKnown RBP8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 MORN3Q6PF18 240 aaPredicted RBP8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 IGKV3D-20A0A0C4DH25 116 aa8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 NDUFA11Q86Y39 141 aa8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 BUB3O43684 328 aa8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 PF4P02776 101 aa8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 RNASE1P07998 156 aaKnown RBP8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 SMR3AQ99954 134 aa8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 SPXQ9BT56 116 aa8.2□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 GNRH2O43555 120 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 IGHV3-53P01767 116 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 DSCR9P59020 149 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 CDIP1Q9H305 208 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 TRAV21A0A0B4J279 112 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 TEX49A0A1B0GTD5 131 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 UNC79Q9P2D8 2635 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 FBN2P35556 2912 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 RPL35AP18077 110 aaKnown RBP8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 COPS9Q8WXC6 57 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 LINC01587Q99440 93 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 C1orf43Q9BWL3 253 aa8.19□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 ZNF80P51504 273 aaPredicted RBP8.18□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 XCL2Q9UBD3 114 aa8.18□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 TRGV11A0A075B6L2 103 aa8.18□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 IGHG4P01861 327 aa8.18□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 MRGPRG-AS1Q2M3A8 158 aa8.18□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 NFE4Q86UQ8 179 aa8.18□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 VCYO14598 125 aa8.18□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 APRG1Q8IVJ8 170 aa8.17□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 SPANXDQ9BXN6 97 aa8.17□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 C18orf65Q6ZTR6 163 aa8.17□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 ADARB2-AS1A8MUL3 147 aa8.17□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 CD28P10747 220 aa8.17□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 HOXD3P31249 432 aaPredicted RBP8.17□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 FAM223BA6NKX1 122 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 PRM2P04554 102 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 FAM223AQ8IWN6 122 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 USMG5Q96IX5 58 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 TIMM21Q9BVV7 248 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 NBEAL2Q6ZNJ1 2754 aa8.16□□□□□ -1.1
MSH5-SAPCD1-207ENST00000493662 IGHV3-16A0A0C4DH30 117 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 486.5 ms