RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MORN4Q8NDC4 146 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 NUP35Q8NFH5 326 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 OR5C1Q8NGR4 320 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 OR10AC1Q8NH08 325 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 BMFQ96LC9 184 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 WFDC6Q9BQY6 131 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 CHAC1Q9BUX1 264 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 EMC6Q9BV81 110 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 MRPL20Q9BYC9 149 aaKnown RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 DPH3P1Q9H4G8 78 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 C16orf95Q9H693 158 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF286AQ9HBT8 521 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 FAM60AQ9NP50 221 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 NXT2Q9NPJ8 142 aaKnown RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 DAZ1Q9NQZ3 744 aaKnown RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 DAZ3Q9NR90 486 aaKnown RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 RBM12B-AS1Q9P1G2 102 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 EPDR1Q9UM22 224 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 AMMECR1Q9Y4X0 333 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 TIMM8BQ9Y5J9 83 aaPredicted RBP1.4□□□□□ -2.19
HMGB1-208ENST00000490788 TRPM6Q9BX84 2022 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 MUC19Q7Z5P9 8384 aa1.4□□□□□ -2.19
HMGB1-208ENST00000490788 PLXNB1O43157 2135 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 TRAV12-2A0A075B6T6 113 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 SMIM26A0A096LP01 95 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 TRAV17A0A0B4J275 112 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 A0A0D9SEW6 157 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 LOC107984156A0A0G2JMH3 177 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 PGPA6NDG6 321 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 KNCNA6PVL3 124 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 C11orf94C9JXX5 98 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 INS-IGF2F8WCM5 200 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 H3BT86 120 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 PANO1I0J062 215 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 M0R1B8 84 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 PDCD6O75340 191 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 LEPROTL1O95214 131 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 HLA-DQA1P01909 254 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 IL4P05112 153 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 ATP5G1P05496 136 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 GYPBP06028 91 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 OR5AL1P0C617 328 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 INAFM2P0DMQ5 153 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 SLC25A16P16260 332 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF823P16415 610 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 CCL1P22362 96 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 CRYGSP22914 178 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 PSMB8P28062 276 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 GCHFRP30047 84 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 FCER1GP30273 86 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 NPC2P61916 151 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 HBG1P69891 147 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 CIRBPQ14011 172 aaKnown RBP1.39□□□□□ -2.19
HMGB1-208ENST00000490788 SS18Q15532 418 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 ORMDL2Q53FV1 153 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 GDF5OSQ5U4N7 250 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 MIC13Q5XKP0 118 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 Q6P435 159 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 SFTA2Q6UW10 78 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 Q6ZS49 121 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 ARL17AQ8IVW1 177 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 RNF182Q8N6D2 247 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 LY6G5BQ8NDX9 201 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 LINC01560Q8TB33 94 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 DCANP1Q8TF63 244 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 EEF1AKMT3Q96AZ1 226 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 CHCHD1Q96BP2 118 aaKnown RBP1.39□□□□□ -2.19
HMGB1-208ENST00000490788 FMC1Q96HJ9 113 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 Q96M85 177 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 GPX7Q96SL4 187 aaPredicted RBP1.39□□□□□ -2.19
HMGB1-208ENST00000490788 RTL8AQ9BWD3 113 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 SPANXDQ9BXN6 97 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 AICDAQ9GZX7 198 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 C11orf1Q9H5F2 150 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 SLC25A22Q9H936 323 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 LINC00527Q9UJ94 153 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 KLF13Q9Y2Y9 288 aaPredicted RBP1.39□□□□□ -2.19
HMGB1-208ENST00000490788 SERP1Q9Y6X1 66 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 ABCA1O95477 2261 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 MDC1Q14676 2089 aaKnown RBP1.39□□□□□ -2.19
HMGB1-208ENST00000490788 MYOFQ9NZM1 2061 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 UNC13CQ8NB66 2214 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 GTF3C1Q12789 2109 aa1.39□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV20OR9-2A0A075B6H5 130 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 IGLV3-22A0A075B6J6 115 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV2D-24A0A075B6R9 120 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 IGHV1OR15-1A0A075B7D0 117 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 CTXND1A0A1B0GTU2 59 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 IZUMO1RA6ND01 250 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 CRYM-AS1A6NIL9 109 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 C8orf87E5RJ46 101 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 NDUFC2-KCTD14E9PQ53 114 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 LGALS9O00182 355 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 UPK2O00526 184 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 SYNGR2O43760 224 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 EPPINO95925 133 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 PPYP01298 95 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 NPYP01303 97 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 LTAP01374 205 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 COL8A2P25067 703 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms