RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 KCNIP4Q6PIL6 250 aa13.63□□□□□ -0.23
HDAC4-209ENST00000487617 LYZL1Q6UWQ5 148 aa13.63□□□□□ -0.23
HDAC4-209ENST00000487617 TRBV6-8A0A0A6YYG3 113 aa13.62□□□□□ -0.23
HDAC4-209ENST00000487617 TMEM250H0YL14 139 aa13.62□□□□□ -0.23
HDAC4-209ENST00000487617 K7EN84 100 aa13.62□□□□□ -0.23
HDAC4-209ENST00000487617 RNASE7Q9H1E1 156 aaKnown RBP13.62□□□□□ -0.23
HDAC4-209ENST00000487617 RYR1P21817 5038 aa13.61□□□□□ -0.23
HDAC4-209ENST00000487617 TMEM262E9PQX1 116 aa13.61□□□□□ -0.23
HDAC4-209ENST00000487617 CHCHD7Q9BUK0 85 aa13.61□□□□□ -0.23
HDAC4-209ENST00000487617 RPP21Q9H633 154 aaKnown RBP13.61□□□□□ -0.23
HDAC4-209ENST00000487617 KLK12Q9UKR0 248 aa13.61□□□□□ -0.23
HDAC4-209ENST00000487617 TRGC1P0CF51 173 aa13.6□□□□□ -0.23
HDAC4-209ENST00000487617 NTF3P20783 257 aa13.6□□□□□ -0.23
HDAC4-209ENST00000487617 CEBPGP53567 150 aa13.6□□□□□ -0.23
HDAC4-209ENST00000487617 Q8N814 137 aa13.6□□□□□ -0.23
HDAC4-209ENST00000487617 KRTAP4-5Q9BYR2 181 aa13.6□□□□□ -0.23
HDAC4-209ENST00000487617 IGLV5-52A0A0A0MRZ9 124 aa13.59□□□□□ -0.23
HDAC4-209ENST00000487617 H7C1H1 209 aa13.59□□□□□ -0.23
HDAC4-209ENST00000487617 KRTAP10-1P60331 282 aa13.59□□□□□ -0.23
HDAC4-209ENST00000487617 ELOBQ15370 118 aa13.59□□□□□ -0.23
HDAC4-209ENST00000487617 NTN5Q8WTR8 489 aaPredicted RBP13.59□□□□□ -0.23
HDAC4-209ENST00000487617 EIF5A2Q9GZV4 153 aaKnown RBP13.59□□□□□ -0.23
HDAC4-209ENST00000487617 M0QY20 66 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 GCSHP23434 173 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 CTRLP40313 264 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 TMEM97Q5BJF2 176 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 SUMO4Q6EEV6 95 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 WDR73Q6P4I2 378 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 UBE2WQ96B02 151 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 RMI2Q96E14 147 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 COX11Q9Y6N1 276 aa13.58□□□□□ -0.24
HDAC4-209ENST00000487617 DNAJC30Q96LL9 226 aa13.57□□□□□ -0.24
HDAC4-209ENST00000487617 CHCHD5Q9BSY4 110 aa13.57□□□□□ -0.24
HDAC4-209ENST00000487617 DPH3P1Q9H4G8 78 aa13.57□□□□□ -0.24
HDAC4-209ENST00000487617 HSPG2P98160 4391 aa13.57□□□□□ -0.24
HDAC4-209ENST00000487617 IGKV2D-24A0A075B6R9 120 aa13.56□□□□□ -0.24
HDAC4-209ENST00000487617 TWIST1Q15672 202 aa13.56□□□□□ -0.24
HDAC4-209ENST00000487617 NTM-AS1Q6ZSK4 140 aa13.56□□□□□ -0.24
HDAC4-209ENST00000487617 Q8N1X5 172 aa13.56□□□□□ -0.24
HDAC4-209ENST00000487617 DNAH5Q8TE73 4624 aa13.55□□□□□ -0.24
HDAC4-209ENST00000487617 LECT2O14960 151 aa13.55□□□□□ -0.24
HDAC4-209ENST00000487617 GATCO43716 136 aaKnown RBP13.55□□□□□ -0.24
HDAC4-209ENST00000487617 WFDC2Q14508 124 aa13.55□□□□□ -0.24
HDAC4-209ENST00000487617 FAM210AQ96ND0 272 aa13.55□□□□□ -0.24
HDAC4-209ENST00000487617 PKIAP61925 76 aa13.54□□□□□ -0.24
HDAC4-209ENST00000487617 Q0VG73 95 aa13.54□□□□□ -0.24
HDAC4-209ENST00000487617 MPV17L2Q567V2 206 aa13.54□□□□□ -0.24
HDAC4-209ENST00000487617 RASL11AQ6T310 242 aa13.54□□□□□ -0.24
HDAC4-209ENST00000487617 C15orf54Q8N8G6 183 aa13.54□□□□□ -0.24
HDAC4-209ENST00000487617 CNFNQ9BYD5 112 aa13.54□□□□□ -0.24
HDAC4-209ENST00000487617 FAM231DQ6ZW35 169 aa13.53□□□□□ -0.24
HDAC4-209ENST00000487617 GTSF1Q8WW33 167 aa13.53□□□□□ -0.24
HDAC4-209ENST00000487617 BAALCQ8WXS3 180 aa13.53□□□□□ -0.24
HDAC4-209ENST00000487617 SMIM7Q9BQ49 75 aa13.53□□□□□ -0.24
HDAC4-209ENST00000487617 TRBV25-1A0A075B6N4 114 aa13.52□□□□□ -0.25
HDAC4-209ENST00000487617 NDUFS6O75380 124 aaKnown RBP13.52□□□□□ -0.25
HDAC4-209ENST00000487617 ANGP03950 147 aaKnown RBP13.52□□□□□ -0.25
HDAC4-209ENST00000487617 XGP55808 180 aa13.52□□□□□ -0.25
HDAC4-209ENST00000487617 APOBP04114 4563 aaKnown RBP13.51□□□□□ -0.25
HDAC4-209ENST00000487617 A8MWL6 223 aa13.51□□□□□ -0.25
HDAC4-209ENST00000487617 CRPP02741 224 aa13.51□□□□□ -0.25
HDAC4-209ENST00000487617 GAGE6Q13070 117 aa13.51□□□□□ -0.25
HDAC4-209ENST00000487617 ATRAIDQ6UW56 229 aa13.51□□□□□ -0.25
HDAC4-209ENST00000487617 Q8N976 141 aa13.51□□□□□ -0.25
HDAC4-209ENST00000487617 NIT2Q9NQR4 276 aa13.51□□□□□ -0.25
HDAC4-209ENST00000487617 IGHV1-24A0A0C4DH33 117 aa13.5□□□□□ -0.25
HDAC4-209ENST00000487617 ZNF727A8MUV8 499 aa13.5□□□□□ -0.25
HDAC4-209ENST00000487617 SRP19P09132 144 aaKnown RBP13.5□□□□□ -0.25
HDAC4-209ENST00000487617 IQCJQ1A5X6 159 aa13.5□□□□□ -0.25
HDAC4-209ENST00000487617 ENHOQ6UWT2 76 aa13.5□□□□□ -0.25
HDAC4-209ENST00000487617 SMIM15Q7Z3B0 74 aa13.5□□□□□ -0.25
HDAC4-209ENST00000487617 PCLOQ9Y6V0 5065 aa13.5□□□□□ -0.25
HDAC4-209ENST00000487617 LINC01551Q86U37 167 aa13.49□□□□□ -0.25
HDAC4-209ENST00000487617 PGLYRP4Q96LB8 373 aa13.49□□□□□ -0.25
HDAC4-209ENST00000487617 C1orf43Q9BWL3 253 aa13.49□□□□□ -0.25
HDAC4-209ENST00000487617 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.48□□□□□ -0.25
HDAC4-209ENST00000487617 RBX1P62877 108 aa13.48□□□□□ -0.25
HDAC4-209ENST00000487617 CT83Q5H943 113 aa13.48□□□□□ -0.25
HDAC4-209ENST00000487617 TRAV26-2A0A0B4J265 109 aa13.47□□□□□ -0.25
HDAC4-209ENST00000487617 GATD1Q8NB37 220 aa13.47□□□□□ -0.25
HDAC4-209ENST00000487617 FOXA3P55318 350 aaPredicted RBP13.46□□□□□ -0.25
HDAC4-209ENST00000487617 DEFB104AQ8WTQ1 72 aa13.46□□□□□ -0.25
HDAC4-209ENST00000487617 TMEM243Q9BU79 118 aa13.46□□□□□ -0.25
HDAC4-209ENST00000487617 TMEM70Q9BUB7 260 aa13.46□□□□□ -0.25
HDAC4-209ENST00000487617 CLPSL2Q6UWE3 100 aa13.45□□□□□ -0.26
HDAC4-209ENST00000487617 FRZBQ92765 325 aa13.45□□□□□ -0.26
HDAC4-209ENST00000487617 BORCS7Q96B45 105 aa13.45□□□□□ -0.26
HDAC4-209ENST00000487617 OSTCQ9NRP0 149 aa13.45□□□□□ -0.26
HDAC4-209ENST00000487617 HAMPP81172 84 aa13.44□□□□□ -0.26
HDAC4-209ENST00000487617 COTL1Q14019 142 aa13.44□□□□□ -0.26
HDAC4-209ENST00000487617 MIAQ16674 131 aa13.44□□□□□ -0.26
HDAC4-209ENST00000487617 TEX261Q6UWH6 196 aa13.44□□□□□ -0.26
HDAC4-209ENST00000487617 LINC00269Q8N2A0 174 aa13.44□□□□□ -0.26
HDAC4-209ENST00000487617 TSKUQ8WUA8 353 aa13.44□□□□□ -0.26
HDAC4-209ENST00000487617 EPM2AB3EWF7 344 aa13.43□□□□□ -0.26
HDAC4-209ENST00000487617 PRR34Q9NV39 138 aa13.43□□□□□ -0.26
HDAC4-209ENST00000487617 HIGD1CA8MV81 97 aa13.42□□□□□ -0.26
HDAC4-209ENST00000487617 AMTP48728 403 aa13.42□□□□□ -0.26
HDAC4-209ENST00000487617 TMEM241Q24JQ0 296 aa13.42□□□□□ -0.26
HDAC4-209ENST00000487617 RPL39LQ96EH5 51 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms