RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 HIST1H2BOP23527 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 SRIP30626 198 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BBP33778 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BDP58876 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BCP62807 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST2H2BEQ16778 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.96□□□□□ -0.49
VIM-205ENST00000485947 FAM74A4Q5TZK3 123 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 UFSP1Q6NVU6 142 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 OR4C5Q8NGB2 326 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BHQ93079 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BNQ99877 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 HIST1H2BMQ99879 126 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 SAMD10Q9BYL1 202 aa11.96□□□□□ -0.49
VIM-205ENST00000485947 TRGV2A0A075B6R0 118 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 GAGE12BA1L429 117 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 GAGE7O76087 117 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 GAGE12FP0CL80 117 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 GAGE12GP0CL81 117 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 GAGE12IP0CL82 117 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 ZNF56Q15929 161 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 PRELID3AQ96N28 172 aa11.95□□□□□ -0.5
VIM-205ENST00000485947 PPP1R17O96001 155 aa11.94□□□□□ -0.5
VIM-205ENST00000485947 ATP5G1P05496 136 aa11.94□□□□□ -0.5
VIM-205ENST00000485947 OR10J3Q5JRS4 329 aa11.94□□□□□ -0.5
VIM-205ENST00000485947 KIAA1109Q2LD37 5005 aa11.94□□□□□ -0.5
VIM-205ENST00000485947 F5H697 171 aa11.93□□□□□ -0.5
VIM-205ENST00000485947 H7C1H1 209 aa11.93□□□□□ -0.5
VIM-205ENST00000485947 HTN3P15516 51 aa11.93□□□□□ -0.5
VIM-205ENST00000485947 SUMO4Q6EEV6 95 aa11.93□□□□□ -0.5
VIM-205ENST00000485947 LINC00336Q6ZUF6 198 aa11.93□□□□□ -0.5
VIM-205ENST00000485947 TMA7Q9Y2S6 64 aaKnown RBP11.93□□□□□ -0.5
VIM-205ENST00000485947 NCR2O95944 276 aa11.92□□□□□ -0.5
VIM-205ENST00000485947 DEFB130BP0DP73 79 aa11.92□□□□□ -0.5
VIM-205ENST00000485947 DEFB130AP0DP74 79 aa11.92□□□□□ -0.5
VIM-205ENST00000485947 Q0VG73 95 aa11.92□□□□□ -0.5
VIM-205ENST00000485947 C18orf32Q8TCD1 76 aa11.92□□□□□ -0.5
VIM-205ENST00000485947 SMKR1H3BMG3 65 aa11.91□□□□□ -0.5
VIM-205ENST00000485947 IGHV3-53P01767 116 aa11.91□□□□□ -0.5
VIM-205ENST00000485947 UBE2DNLQ8IWF7 75 aa11.91□□□□□ -0.5
VIM-205ENST00000485947 ZNF479Q96JC4 524 aa11.91□□□□□ -0.5
VIM-205ENST00000485947 DNAH10Q8IVF4 4471 aa11.91□□□□□ -0.5
VIM-205ENST00000485947 TRAV26-2A0A0B4J265 109 aa11.9□□□□□ -0.5
VIM-205ENST00000485947 TNFRSF6BO95407 300 aa11.9□□□□□ -0.5
VIM-205ENST00000485947 NPYP01303 97 aa11.9□□□□□ -0.5
VIM-205ENST00000485947 S100A6P06703 90 aa11.9□□□□□ -0.5
VIM-205ENST00000485947 NRACQ8N912 160 aa11.9□□□□□ -0.5
VIM-205ENST00000485947 IGHV3-73A0A0B4J1V6 119 aa11.89□□□□□ -0.51
VIM-205ENST00000485947 PRSS47A8MTI9 375 aa11.89□□□□□ -0.51
VIM-205ENST00000485947 M0QY20 66 aa11.89□□□□□ -0.51
VIM-205ENST00000485947 COA6Q5JTJ3 125 aaKnown RBP11.89□□□□□ -0.51
VIM-205ENST00000485947 C20orf78Q9BR46 151 aa11.89□□□□□ -0.51
VIM-205ENST00000485947 MAP1LC3AQ9H492 121 aa11.89□□□□□ -0.51
VIM-205ENST00000485947 VPS13DQ5THJ4 4388 aa11.88□□□□□ -0.51
VIM-205ENST00000485947 F5H768 121 aa11.88□□□□□ -0.51
VIM-205ENST00000485947 TRGV4A0A0C4DH28 118 aa11.87□□□□□ -0.51
VIM-205ENST00000485947 TRBV6-5A0A0K0K1A5 114 aa11.87□□□□□ -0.51
VIM-205ENST00000485947 GAS8-AS1O95177 125 aa11.87□□□□□ -0.51
VIM-205ENST00000485947 GATA1P15976 413 aaPredicted RBP11.87□□□□□ -0.51
VIM-205ENST00000485947 NDUFA6P56556 154 aa11.87□□□□□ -0.51
VIM-205ENST00000485947 BAGE3Q86Y29 109 aa11.87□□□□□ -0.51
VIM-205ENST00000485947 DNAJC30Q96LL9 226 aa11.87□□□□□ -0.51
VIM-205ENST00000485947 NIT2Q9NQR4 276 aa11.87□□□□□ -0.51
VIM-205ENST00000485947 TRBV10-1A0A0K0K1A3 114 aa11.86□□□□□ -0.51
VIM-205ENST00000485947 TRBV6-4A0A1B0GX49 114 aa11.86□□□□□ -0.51
VIM-205ENST00000485947 H3BNG1 76 aa11.86□□□□□ -0.51
VIM-205ENST00000485947 K7EQD1 137 aa11.86□□□□□ -0.51
VIM-205ENST00000485947 RPL32P62910 135 aaKnown RBP11.86□□□□□ -0.51
VIM-205ENST00000485947 IQCJQ1A5X6 159 aa11.86□□□□□ -0.51
VIM-205ENST00000485947 ST20Q9HBF5 79 aa11.86□□□□□ -0.51
VIM-205ENST00000485947 NXT2Q9NPJ8 142 aaKnown RBP11.86□□□□□ -0.51
VIM-205ENST00000485947 SUMO2P61956 95 aaKnown RBP11.85□□□□□ -0.51
VIM-205ENST00000485947 FHL2Q14192 279 aa11.85□□□□□ -0.51
VIM-205ENST00000485947 RPL39LQ96EH5 51 aaKnown RBP11.85□□□□□ -0.51
VIM-205ENST00000485947 PMCHP20382 165 aa11.84□□□□□ -0.51
VIM-205ENST00000485947 CCL18P55774 89 aa11.84□□□□□ -0.51
VIM-205ENST00000485947 RHOHQ15669 191 aa11.84□□□□□ -0.51
VIM-205ENST00000485947 Q6ZR54 194 aa11.84□□□□□ -0.51
VIM-205ENST00000485947 Q6ZSN1 163 aa11.84□□□□□ -0.51
VIM-205ENST00000485947 PRSS3P2Q8NHM4 247 aa11.84□□□□□ -0.51
VIM-205ENST00000485947 SMIM2Q9BVW6 85 aa11.84□□□□□ -0.51
VIM-205ENST00000485947 ESDP10768 282 aa11.83□□□□□ -0.52
VIM-205ENST00000485947 FA2HQ7L5A8 372 aa11.83□□□□□ -0.52
VIM-205ENST00000485947 Q8N8P6 123 aa11.83□□□□□ -0.52
VIM-205ENST00000485947 SLC25A29Q8N8R3 303 aa11.83□□□□□ -0.52
VIM-205ENST00000485947 NEXN-AS1Q8NBZ9 246 aa11.83□□□□□ -0.52
VIM-205ENST00000485947 CHCHD1Q96BP2 118 aaKnown RBP11.83□□□□□ -0.52
VIM-205ENST00000485947 PRADC1Q9BSG0 188 aa11.83□□□□□ -0.52
VIM-205ENST00000485947 DNAH6Q9C0G6 4158 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 LOC389332A0A1B0GUA5 103 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 C5orf52A6NGY3 159 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 K7EMI3 77 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 SERF1AO75920 110 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 LINC00614P0C842 121 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 POLR2KP53803 58 aaKnown RBP11.82□□□□□ -0.52
VIM-205ENST00000485947 RPL36AP83881 106 aaKnown RBP11.82□□□□□ -0.52
VIM-205ENST00000485947 NIT1Q86X76 327 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 RPL36ALQ969Q0 106 aaKnown RBP11.82□□□□□ -0.52
VIM-205ENST00000485947 TMEM70Q9BUB7 260 aa11.82□□□□□ -0.52
VIM-205ENST00000485947 PRO0255Q9UI72 69 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms