RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 LTAP01374 205 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 HLA-DQA1P01909 254 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 PRSS1P07477 247 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 FHITP49789 147 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 NTM-AS1Q6ZSK4 140 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 ZFP82Q8N141 532 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 OR10G8Q8NGN5 311 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 STOML3Q8TAV4 291 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 FMC1Q96HJ9 113 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 MAP1LC3BQ9GZQ8 125 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 ZFP30Q9Y2G7 519 aa8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.91□□□□□ -0.98
SQSTM1-208ENST00000485412 LINC00862A6NCI5 91 aa8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 ANGP03950 147 aaKnown RBP8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 MT1HL1P0DM35 61 aa8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 UBE2G1P62253 170 aa8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 EIF5AP63241 154 aaKnown RBP8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 Q0VG73 95 aa8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 ZNF56Q15929 161 aa8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 PRR27Q6MZM9 219 aa8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 KRTAP26-1Q6PEX3 210 aa8.9□□□□□ -0.98
SQSTM1-208ENST00000485412 BORCS7-ASMTA0A0B4J1R7 106 aa8.89□□□□□ -0.99
SQSTM1-208ENST00000485412 AKR1C8PQ5T2L2 129 aa8.89□□□□□ -0.99
SQSTM1-208ENST00000485412 CST9LP1Q5W188 147 aa8.89□□□□□ -0.99
SQSTM1-208ENST00000485412 TRBV6-1A0A0K0K1D8 114 aa8.88□□□□□ -0.99
SQSTM1-208ENST00000485412 CRPP02741 224 aa8.88□□□□□ -0.99
SQSTM1-208ENST00000485412 RAB4BP61018 213 aa8.88□□□□□ -0.99
SQSTM1-208ENST00000485412 SSTP61278 116 aa8.88□□□□□ -0.99
SQSTM1-208ENST00000485412 CHCHD5Q9BSY4 110 aa8.88□□□□□ -0.99
SQSTM1-208ENST00000485412 ZNF471Q9BX82 626 aaPredicted RBP8.88□□□□□ -0.99
SQSTM1-208ENST00000485412 NKX6-2Q9C056 277 aaPredicted RBP8.88□□□□□ -0.99
SQSTM1-208ENST00000485412 PAGE4O60829 102 aa8.87□□□□□ -0.99
SQSTM1-208ENST00000485412 AKR1C3P42330 323 aa8.87□□□□□ -0.99
SQSTM1-208ENST00000485412 Q6ZRU5 148 aa8.87□□□□□ -0.99
SQSTM1-208ENST00000485412 LRP2P98164 4655 aa8.87□□□□□ -0.99
SQSTM1-208ENST00000485412 RNF213Q63HN8 5207 aa8.87□□□□□ -0.99
SQSTM1-208ENST00000485412 A0A1B0GV50 99 aa8.86□□□□□ -0.99
SQSTM1-208ENST00000485412 SCO2A0A1W2PP80 73 aa8.86□□□□□ -0.99
SQSTM1-208ENST00000485412 RBX1P62877 108 aa8.86□□□□□ -0.99
SQSTM1-208ENST00000485412 GAGE6Q13070 117 aa8.86□□□□□ -0.99
SQSTM1-208ENST00000485412 CLLU1Q5K131 121 aa8.86□□□□□ -0.99
SQSTM1-208ENST00000485412 EIF5AL1Q6IS14 154 aaKnown RBP8.86□□□□□ -0.99
SQSTM1-208ENST00000485412 C9orf163Q8N9P6 203 aa8.86□□□□□ -0.99
SQSTM1-208ENST00000485412 SNAI2O43623 268 aa8.85□□□□□ -0.99
SQSTM1-208ENST00000485412 LINC00269Q8N2A0 174 aa8.85□□□□□ -0.99
SQSTM1-208ENST00000485412 MLST8Q9BVC4 326 aa8.85□□□□□ -0.99
SQSTM1-208ENST00000485412 PRR34Q9NV39 138 aa8.85□□□□□ -0.99
SQSTM1-208ENST00000485412 KIF25-AS1Q9Y6Z4 181 aa8.85□□□□□ -0.99
SQSTM1-208ENST00000485412 IGLV10-54A0A075B6I4 117 aa8.84□□□□□ -0.99
SQSTM1-208ENST00000485412 RAB14P61106 215 aa8.84□□□□□ -0.99
SQSTM1-208ENST00000485412 MIAQ16674 131 aa8.84□□□□□ -0.99
SQSTM1-208ENST00000485412 DGAT2L7PQ6IED9 249 aa8.84□□□□□ -0.99
SQSTM1-208ENST00000485412 SDIM1Q6ZPB5 146 aa8.84□□□□□ -0.99
SQSTM1-208ENST00000485412 SSBP4Q9BWG4 385 aaPredicted RBP8.84□□□□□ -0.99
SQSTM1-208ENST00000485412 VAX2Q9UIW0 290 aa8.84□□□□□ -0.99
SQSTM1-208ENST00000485412 F5H697 171 aa8.83□□□□□ -1
SQSTM1-208ENST00000485412 ALKAL2Q6UX46 152 aa8.83□□□□□ -1
SQSTM1-208ENST00000485412 COMMD7Q86VX2 200 aa8.83□□□□□ -1
SQSTM1-208ENST00000485412 DERL1Q9BUN8 251 aa8.83□□□□□ -1
SQSTM1-208ENST00000485412 GFRA4Q9GZZ7 299 aa8.83□□□□□ -1
SQSTM1-208ENST00000485412 DPH3P1Q9H4G8 78 aa8.83□□□□□ -1
SQSTM1-208ENST00000485412 SLPIP03973 132 aa8.82□□□□□ -1
SQSTM1-208ENST00000485412 CXCL1P09341 107 aa8.82□□□□□ -1
SQSTM1-208ENST00000485412 CHTF8P0CG12 524 aa8.82□□□□□ -1
SQSTM1-208ENST00000485412 GZMBP10144 247 aa8.82□□□□□ -1
SQSTM1-208ENST00000485412 SPANXN1Q5VSR9 72 aa8.82□□□□□ -1
SQSTM1-208ENST00000485412 TCEAL7Q9BRU2 100 aa8.82□□□□□ -1
SQSTM1-208ENST00000485412 MED9Q9NWA0 146 aa8.82□□□□□ -1
SQSTM1-208ENST00000485412 OR5AL1P0C617 328 aa8.81□□□□□ -1
SQSTM1-208ENST00000485412 BAGE2Q86Y30 109 aa8.81□□□□□ -1
SQSTM1-208ENST00000485412 C20orf203Q8NBC4 194 aa8.81□□□□□ -1
SQSTM1-208ENST00000485412 FAM213BQ8TBF2 198 aa8.81□□□□□ -1
SQSTM1-208ENST00000485412 IGLV4-60A0A075B6I1 120 aa8.8□□□□□ -1
SQSTM1-208ENST00000485412 SULT1A2P50226 295 aa8.8□□□□□ -1
SQSTM1-208ENST00000485412 RAB5CP51148 216 aa8.8□□□□□ -1
SQSTM1-208ENST00000485412 REG3AQ06141 175 aa8.8□□□□□ -1
SQSTM1-208ENST00000485412 SFT2D1Q8WV19 159 aa8.8□□□□□ -1
SQSTM1-208ENST00000485412 TRBV25-1A0A075B6N4 114 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 M0QY20 66 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 MGPP08493 103 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 PKIAP61925 76 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 CIRBPQ14011 172 aaKnown RBP8.79□□□□□ -1
SQSTM1-208ENST00000485412 ODF1Q14990 250 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 IQCJQ1A5X6 159 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 MBD3L1Q8WWY6 194 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 DPH3Q96FX2 82 aa8.79□□□□□ -1
SQSTM1-208ENST00000485412 hDV102S1A0JD36 115 aa8.78□□□□□ -1
SQSTM1-208ENST00000485412 UMAD1C9J7I0 102 aa8.78□□□□□ -1
SQSTM1-208ENST00000485412 SUMO4Q6EEV6 95 aa8.78□□□□□ -1
SQSTM1-208ENST00000485412 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.78□□□□□ -1
SQSTM1-208ENST00000485412 AP1S3Q96PC3 154 aa8.78□□□□□ -1
SQSTM1-208ENST00000485412 TPPP3Q9BW30 176 aa8.78□□□□□ -1
SQSTM1-208ENST00000485412 IGHV1-24A0A0C4DH33 117 aa8.77□□□□□ -1.01
SQSTM1-208ENST00000485412 IGLC6P0CF74 106 aa8.77□□□□□ -1.01
SQSTM1-208ENST00000485412 RPL35P42766 123 aaKnown RBP8.77□□□□□ -1.01
SQSTM1-208ENST00000485412 CNBPP62633 177 aaKnown RBP8.77□□□□□ -1.01
SQSTM1-208ENST00000485412 BLOC1S1P78537 153 aa8.77□□□□□ -1.01
SQSTM1-208ENST00000485412 A0A087WYN8 130 aa8.76□□□□□ -1.01
SQSTM1-208ENST00000485412 S100A9P06702 114 aaKnown RBP8.76□□□□□ -1.01
SQSTM1-208ENST00000485412 SMIM17P0DL12 118 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms