RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SYNJ2BPP57105 145 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 IGHV3-33P01772 117 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 SPINK13Q1W4C9 94 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 TTTY13Q9BZ97 58 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 C22orf24Q9Y442 160 aa4.03□□□□□ -1.76
SYNE1-220ENST00000471834 IGHV1-69P01742 117 aa4.03□□□□□ -1.77
SYNE1-220ENST00000471834 MSRB1Q9NZV6 116 aa4.03□□□□□ -1.77
SYNE1-220ENST00000471834 ATP6V0E1O15342 81 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 DSCAMO60469 2012 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 K7ERJ3 54 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 OBSCN-AS1Q96MR7 158 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 M0R1W7 72 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 TECTAO75443 2155 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 DEFB130BP0DP73 79 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 DEFB130AP0DP74 79 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 HILS1P60008 231 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 TIMM21Q9BVV7 248 aa4.02□□□□□ -1.77
SYNE1-220ENST00000471834 RPS28P62857 69 aaKnown RBP4.02□□□□□ -1.77
SYNE1-220ENST00000471834 C9JAW5 83 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 SS18Q15532 418 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 C9orf139Q6ZV77 190 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 TP53TG1Q9Y2A0 90 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE2BQ13066 116 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 SUMO4Q6EEV6 95 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 HOXD3P31249 432 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-220ENST00000471834 ANXA2RQ3ZCQ2 193 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 TMEM86BQ8N661 226 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 DEFB105AQ8NG35 78 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 DIDO1Q9BTC0 2240 aaKnown RBP4.01□□□□□ -1.77
SYNE1-220ENST00000471834 A0A1B0GX51 115 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE12JA6NER3 117 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE4Q13068 117 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE5Q13069 117 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE6Q13070 117 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 PMVKQ15126 192 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 MINOS1Q5TGZ0 78 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 JPT2Q9H910 190 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 MINOS1-NBL1R4GNA1 71 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 DAND5Q8N907 189 aa4.01□□□□□ -1.77
SYNE1-220ENST00000471834 VCYO14598 125 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 C5orf38Q86SI9 138 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 C9orf85Q96MD7 179 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 XCL2Q9UBD3 114 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 H3BMM0 161 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 LGALS9O00182 355 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 SPRY2O43597 315 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 UBE2WQ96B02 151 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 H3BUA1 57 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 IFITM1P13164 125 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 PFN2P35080 140 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 DEFB131AP59861 70 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 LRRC75A-AS1Q8N1F1 130 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 C7orf33Q8WU49 177 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 G3V318 75 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 IGF1P05019 195 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 TMEM263Q8WUH6 116 aaKnown RBP4□□□□□ -1.77
SYNE1-220ENST00000471834 RHPN1-AS1Q9BWJ2 59 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 MALRD1Q5VYJ5 2156 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 C6orf226Q5I0X4 101 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 TRPT1Q86TN4 253 aaKnown RBP4□□□□□ -1.77
SYNE1-220ENST00000471834 TMEM141Q96I45 108 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 I3L3M4 83 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 LY6G6DO95868 133 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 PLEKHB2Q96CS7 222 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 LINC00467Q9BRT7 94 aa4□□□□□ -1.77
SYNE1-220ENST00000471834 WNK2Q9Y3S1 2297 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 RIF1Q5UIP0 2472 aaKnown RBP3.99□□□□□ -1.77
SYNE1-220ENST00000471834 TRAV25A0A0B4J276 109 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 IGLV5-39A0A0G2JS06 123 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 DCANP1Q8TF63 244 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 SPTAN1Q13813 2472 aaKnown RBP3.99□□□□□ -1.77
SYNE1-220ENST00000471834 TMEM223A0PJW6 202 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 ZNF561-AS1K7EIQ3 104 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE7O76087 117 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE12FP0CL80 117 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE12GP0CL81 117 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 GAGE12IP0CL82 117 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 CNOT1A5YKK6 2376 aaKnown RBP3.99□□□□□ -1.77
SYNE1-220ENST00000471834 NUPR2A6NF83 97 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 ATP5G1P05496 136 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 RPL36AP83881 106 aaKnown RBP3.99□□□□□ -1.77
SYNE1-220ENST00000471834 RPL36ALQ969Q0 106 aaKnown RBP3.99□□□□□ -1.77
SYNE1-220ENST00000471834 LRCOL1A6NCL2 159 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 RNASE3P12724 160 aaKnown RBP3.99□□□□□ -1.77
SYNE1-220ENST00000471834 C2orf66Q6UXQ4 117 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 USMG5Q96IX5 58 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 NOTCH2Q04721 2471 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 IGHV7-81A0A0B4J1V7 117 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 PRR14LQ5THK1 2151 aa3.99□□□□□ -1.77
SYNE1-220ENST00000471834 CFAP46Q8IYW2 2715 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 CCDC140Q96MF4 163 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 ACACAQ13085 2346 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 MUC6Q6W4X9 2439 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 CUL9Q8IWT3 2517 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 RS1O15537 224 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 RHOHQ15669 191 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 C11orf71Q6IPW1 123 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 Q6ZQT7 251 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 SH2D6Q7Z4S9 175 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 DYNAPQ8N1N2 210 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms