RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 HIST1H2BOP23527 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST1H2BBP33778 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST1H2BDP58876 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 RAB4BP61018 213 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST1H2BCP62807 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 RPL32P62910 135 aaKnown RBP3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST2H2BEQ16778 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 MRPL51Q4U2R6 128 aaKnown RBP3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.9□□□□□ -1.79
VPS41-211ENST00000466017 AMN1Q8IY45 258 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 ORMDL3Q8N138 153 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 OR11H2Q8NH07 326 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST1H2BHQ93079 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 PACRGQ96M98 296 aaPredicted RBP3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST1H2BNQ99877 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 HIST1H2BMQ99879 126 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 C20orf78Q9BR46 151 aa3.9□□□□□ -1.79
VPS41-211ENST00000466017 DNAH3Q8TD57 4116 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 IGHV3OR16-12A0A075B7B8 117 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 LINC01546A6NGU7 62 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 C5orf52A6NGY3 159 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 K7EMI3 77 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 IGHV3-53P01767 116 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 PRM2P04554 102 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 SMIM17P0DL12 118 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 HTN1P15515 57 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 CKS2P33552 79 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 CFAP126Q5VTH2 177 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 C14orf178Q8N769 122 aaPredicted RBP3.89□□□□□ -1.79
VPS41-211ENST00000466017 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.89□□□□□ -1.79
VPS41-211ENST00000466017 Q8NAQ8 132 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 DNAJC30Q96LL9 226 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 TM2D3Q9BRN9 247 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 NOP10Q9NPE3 64 aaKnown RBP3.89□□□□□ -1.79
VPS41-211ENST00000466017 TENM1Q9UKZ4 2725 aa3.89□□□□□ -1.79
VPS41-211ENST00000466017 STAB1Q9NY15 2570 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 MUC21A0A0G2JKD1 596 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 TRBV10-1A0A0K0K1A3 114 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 MUC21A0A140T8X8 626 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 TRBV6-4A0A1B0GX49 114 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 KRTAP29-1A8MX34 341 aaPredicted RBP3.88□□□□□ -1.79
VPS41-211ENST00000466017 D6R8Y8 96 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 H7C1H1 209 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 M0QY20 66 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 TNFRSF6BO95407 300 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 PMCHP20382 165 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 SRIP30626 198 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 POLR2KP53803 58 aaKnown RBP3.88□□□□□ -1.79
VPS41-211ENST00000466017 DEFB135Q30KP9 77 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 KIAA1644Q3SXP7 199 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 SBSPONQ8IVN8 264 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 OR4C5Q8NGB2 326 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 C18orf32Q8TCD1 76 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 CHCHD1Q96BP2 118 aaKnown RBP3.88□□□□□ -1.79
VPS41-211ENST00000466017 PRELID3AQ96N28 172 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 SAMD10Q9BYL1 202 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 C11orf68Q9H3H3 251 aaKnown RBP3.88□□□□□ -1.79
VPS41-211ENST00000466017 NIT2Q9NQR4 276 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 ANK2Q01484 3957 aa3.88□□□□□ -1.79
VPS41-211ENST00000466017 IGLV2-18A0A075B6J9 118 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 TRGV1A0A0A0MS02 117 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 IGHV4-28A0A0C4DH34 117 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 LINC01549A6NIU2 74 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 TCAPO15273 167 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 S100A6P06703 90 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 LINC00614P0C842 121 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 SPART-AS1P0CW21 52 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 G0S2P27469 103 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 NDUFA6P56556 154 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 Q6ZTI0 123 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 NIT1Q86X76 327 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 MAP1LC3AQ9H492 121 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 JPT2Q9H910 190 aa3.87□□□□□ -1.79
VPS41-211ENST00000466017 NXT2Q9NPJ8 142 aaKnown RBP3.87□□□□□ -1.79
VPS41-211ENST00000466017 MRPL16Q9NX20 251 aaKnown RBP3.87□□□□□ -1.79
VPS41-211ENST00000466017 TRBV27A0A0K0K1C4 114 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 VCYO14598 125 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 NPYP01303 97 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 GATA1P15976 413 aaPredicted RBP3.86□□□□□ -1.79
VPS41-211ENST00000466017 NANOS2P60321 138 aaKnown RBP3.86□□□□□ -1.79
VPS41-211ENST00000466017 SSTP61278 116 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 DEFB121Q5J5C9 76 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 FAM222AQ5U5X8 452 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 BAGE3Q86Y29 109 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 Q8N8P6 123 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 URB1-AS1Q96HZ7 61 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 B9D2Q9BPU9 175 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 NACAE9PAV3 2078 aa3.86□□□□□ -1.79
VPS41-211ENST00000466017 VWFP04275 2813 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 TRGV2A0A075B6R0 118 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 H3BNG1 76 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 GAGE7O76087 117 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 ATP5G1P05496 136 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 GAGE12FP0CL80 117 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 GAGE12GP0CL81 117 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 GAGE12IP0CL82 117 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 SNRPEP62304 92 aaKnown RBP3.85□□□□□ -1.79
VPS41-211ENST00000466017 TMEM18Q96B42 140 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 ZNF479Q96JC4 524 aa3.85□□□□□ -1.79
VPS41-211ENST00000466017 SMIM2Q9BVW6 85 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms