RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 Q9UF83 564 aa12.01□□□□□ -0.49
LIME1-202ENST00000444951 FAT2Q9NYQ8 4349 aa12□□□□□ -0.49
LIME1-202ENST00000444951 A0A096LPF7 62 aa12□□□□□ -0.49
LIME1-202ENST00000444951 RAB4AP20338 218 aa12□□□□□ -0.49
LIME1-202ENST00000444951 RNF185Q96GF1 192 aa12□□□□□ -0.49
LIME1-202ENST00000444951 GAGE12JA6NER3 117 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 SMKR1H3BMG3 65 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 GAGE1Q13065 139 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 GAGE4Q13068 117 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 GAGE5Q13069 117 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 GAGE13Q4V321 117 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 FAM104BQ5XKR9 115 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 FAM210BQ96KR6 192 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 ICOSQ9Y6W8 199 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 DNAH2Q9P225 4427 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 DNAH17Q9UFH2 4485 aa11.99□□□□□ -0.49
LIME1-202ENST00000444951 NCR2O95944 276 aa11.98□□□□□ -0.49
LIME1-202ENST00000444951 MRPL51Q4U2R6 128 aaKnown RBP11.98□□□□□ -0.49
LIME1-202ENST00000444951 GATD1Q8NB37 220 aa11.98□□□□□ -0.49
LIME1-202ENST00000444951 KRTAP17-1Q9BYP8 105 aa11.98□□□□□ -0.49
LIME1-202ENST00000444951 H7C1H1 209 aa11.97□□□□□ -0.49
LIME1-202ENST00000444951 M0QY20 66 aa11.97□□□□□ -0.49
LIME1-202ENST00000444951 LGALS9CQ6DKI2 356 aa11.97□□□□□ -0.49
LIME1-202ENST00000444951 TMEM136Q6ZRR5 245 aa11.97□□□□□ -0.49
LIME1-202ENST00000444951 ZNRF2Q8NHG8 242 aa11.97□□□□□ -0.49
LIME1-202ENST00000444951 GAS8-AS1O95177 125 aa11.96□□□□□ -0.49
LIME1-202ENST00000444951 SRIP30626 198 aa11.96□□□□□ -0.49
LIME1-202ENST00000444951 RASL11AQ6T310 242 aa11.96□□□□□ -0.49
LIME1-202ENST00000444951 C15orf53Q8NAA6 179 aa11.96□□□□□ -0.49
LIME1-202ENST00000444951 NEXN-AS1Q8NBZ9 246 aa11.96□□□□□ -0.49
LIME1-202ENST00000444951 RPL39LQ96EH5 51 aaKnown RBP11.96□□□□□ -0.49
LIME1-202ENST00000444951 APLNQ9ULZ1 77 aa11.96□□□□□ -0.49
LIME1-202ENST00000444951 KIAA1109Q2LD37 5005 aa11.96□□□□□ -0.5
LIME1-202ENST00000444951 H3BNG1 76 aa11.95□□□□□ -0.5
LIME1-202ENST00000444951 CKS2P33552 79 aa11.95□□□□□ -0.5
LIME1-202ENST00000444951 RPL36AP83881 106 aaKnown RBP11.95□□□□□ -0.5
LIME1-202ENST00000444951 MRPL23Q16540 153 aaKnown RBP11.95□□□□□ -0.5
LIME1-202ENST00000444951 RPL36ALQ969Q0 106 aaKnown RBP11.95□□□□□ -0.5
LIME1-202ENST00000444951 MRAP2Q96G30 205 aa11.95□□□□□ -0.5
LIME1-202ENST00000444951 YPEL4Q96NS1 127 aa11.95□□□□□ -0.5
LIME1-202ENST00000444951 TNFRSF18Q9Y5U5 241 aa11.95□□□□□ -0.5
LIME1-202ENST00000444951 TRBV24-1A0A075B6N3 115 aa11.94□□□□□ -0.5
LIME1-202ENST00000444951 TRBV10-1A0A0K0K1A3 114 aa11.94□□□□□ -0.5
LIME1-202ENST00000444951 OR10J3Q5JRS4 329 aa11.94□□□□□ -0.5
LIME1-202ENST00000444951 FRZBQ92765 325 aa11.94□□□□□ -0.5
LIME1-202ENST00000444951 PKHD1P08F94 4074 aa11.94□□□□□ -0.5
LIME1-202ENST00000444951 D6R8Y8 96 aa11.93□□□□□ -0.5
LIME1-202ENST00000444951 APCSP02743 223 aa11.93□□□□□ -0.5
LIME1-202ENST00000444951 KIAA1644Q3SXP7 199 aa11.93□□□□□ -0.5
LIME1-202ENST00000444951 GNB1LQ9BYB4 327 aa11.93□□□□□ -0.5
LIME1-202ENST00000444951 NIT2Q9NQR4 276 aa11.93□□□□□ -0.5
LIME1-202ENST00000444951 PCLOQ9Y6V0 5065 aa11.93□□□□□ -0.5
LIME1-202ENST00000444951 DYNC1H1Q14204 4646 aaKnown RBP11.92□□□□□ -0.5
LIME1-202ENST00000444951 TRBV7-3A0A075B6L6 115 aa11.92□□□□□ -0.5
LIME1-202ENST00000444951 IGHV3-38A0A0C4DH36 116 aa11.92□□□□□ -0.5
LIME1-202ENST00000444951 HLA-DQA1P01909 254 aa11.92□□□□□ -0.5
LIME1-202ENST00000444951 RPS10P46783 165 aaKnown RBP11.92□□□□□ -0.5
LIME1-202ENST00000444951 COX19Q49B96 90 aa11.92□□□□□ -0.5
LIME1-202ENST00000444951 NEGR1Q7Z3B1 354 aa11.92□□□□□ -0.5
LIME1-202ENST00000444951 DEFB104AQ8WTQ1 72 aa11.92□□□□□ -0.5
LIME1-202ENST00000444951 MRPL18Q9H0U6 180 aaKnown RBP11.92□□□□□ -0.5
LIME1-202ENST00000444951 FABP9Q0Z7S8 132 aa11.91□□□□□ -0.5
LIME1-202ENST00000444951 ATP6V0E2Q8NHE4 81 aa11.91□□□□□ -0.5
LIME1-202ENST00000444951 DNAJC30Q96LL9 226 aa11.91□□□□□ -0.5
LIME1-202ENST00000444951 TRAPPC1Q9Y5R8 145 aa11.91□□□□□ -0.5
LIME1-202ENST00000444951 TCTAP57738 103 aa11.9□□□□□ -0.5
LIME1-202ENST00000444951 UBE2D3P61077 147 aa11.9□□□□□ -0.5
LIME1-202ENST00000444951 UBE2D2P62837 147 aa11.9□□□□□ -0.5
LIME1-202ENST00000444951 ORMDL3Q8N138 153 aa11.9□□□□□ -0.5
LIME1-202ENST00000444951 PRELID3AQ96N28 172 aa11.9□□□□□ -0.5
LIME1-202ENST00000444951 MT-ND6P03923 174 aa11.89□□□□□ -0.51
LIME1-202ENST00000444951 LINC00694P0DN24 101 aa11.89□□□□□ -0.51
LIME1-202ENST00000444951 NRACQ8N912 160 aa11.89□□□□□ -0.51
LIME1-202ENST00000444951 ST20Q9HBF5 79 aa11.89□□□□□ -0.51
LIME1-202ENST00000444951 COLCA2A8K830 154 aa11.88□□□□□ -0.51
LIME1-202ENST00000444951 TNFRSF6BO95407 300 aa11.88□□□□□ -0.51
LIME1-202ENST00000444951 NPYP01303 97 aa11.88□□□□□ -0.51
LIME1-202ENST00000444951 PPBPP02775 128 aa11.88□□□□□ -0.51
LIME1-202ENST00000444951 ESRGQ1W209 222 aa11.88□□□□□ -0.51
LIME1-202ENST00000444951 SH2D6Q7Z4S9 175 aa11.88□□□□□ -0.51
LIME1-202ENST00000444951 UBE2DNLQ8IWF7 75 aa11.88□□□□□ -0.51
LIME1-202ENST00000444951 SDHAF1A6NFY7 115 aa11.87□□□□□ -0.51
LIME1-202ENST00000444951 LYPD5Q6UWN5 251 aa11.87□□□□□ -0.51
LIME1-202ENST00000444951 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.87□□□□□ -0.51
LIME1-202ENST00000444951 PPP1R17O96001 155 aa11.86□□□□□ -0.51
LIME1-202ENST00000444951 CCL18P55774 89 aa11.86□□□□□ -0.51
LIME1-202ENST00000444951 GTSF1LQ9H1H1 148 aa11.86□□□□□ -0.51
LIME1-202ENST00000444951 DNAH11Q96DT5 4516 aa11.86□□□□□ -0.51
LIME1-202ENST00000444951 TRBV6-5A0A0K0K1A5 114 aa11.85□□□□□ -0.51
LIME1-202ENST00000444951 LOC389332A0A1B0GUA5 103 aa11.85□□□□□ -0.51
LIME1-202ENST00000444951 RAB5AP20339 215 aa11.85□□□□□ -0.51
LIME1-202ENST00000444951 PMCHP20382 165 aa11.85□□□□□ -0.51
LIME1-202ENST00000444951 SUMO2P61956 95 aaKnown RBP11.85□□□□□ -0.51
LIME1-202ENST00000444951 DAZ4Q86SG3 579 aaKnown RBP11.85□□□□□ -0.51
LIME1-202ENST00000444951 DAZ3Q9NR90 486 aaKnown RBP11.85□□□□□ -0.51
LIME1-202ENST00000444951 LINC00588Q9Y4M8 146 aa11.85□□□□□ -0.51
LIME1-202ENST00000444951 RYR1P21817 5038 aa11.84□□□□□ -0.51
LIME1-202ENST00000444951 TMEM70Q9BUB7 260 aa11.83□□□□□ -0.52
LIME1-202ENST00000444951 PKD1P98161 4303 aa11.82□□□□□ -0.52
LIME1-202ENST00000444951 TRGC2P03986 189 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms