RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 IGHV3-53P01767 116 aa8.55□□□□□ -1.04
PTPRF-208ENST00000437607 DEFB131BA0A096LNP1 70 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 IGHV3-73A0A0B4J1V6 119 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 CIDEAO60543 219 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 ZFP2Q6ZN57 461 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 POM121L12Q8N7R1 296 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 MRAP2Q96G30 205 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 C18orf15Q96N68 181 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 SAMD10Q9BYL1 202 aa8.54□□□□□ -1.04
PTPRF-208ENST00000437607 TRGV4A0A0C4DH28 118 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 PRSS29PA6NIE9 313 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 C1orf196B1AJZ1 125 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 D6R8Y8 96 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 H7C1H1 209 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 NCR2O95944 276 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 PPBPP02775 128 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 TRGC2P03986 189 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 CRYGDP07320 174 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 CKS2P33552 79 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 MRPL51Q4U2R6 128 aaKnown RBP8.53□□□□□ -1.04
PTPRF-208ENST00000437607 ORMDL3Q8N138 153 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 RNF185Q96GF1 192 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 ZNF479Q96JC4 524 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 KIF25-AS1Q9Y6Z4 181 aa8.53□□□□□ -1.04
PTPRF-208ENST00000437607 DNAH5Q8TE73 4624 aa8.52□□□□□ -1.04
PTPRF-208ENST00000437607 TRAV26-2A0A0B4J265 109 aa8.52□□□□□ -1.05
PTPRF-208ENST00000437607 M0R2N4 97 aa8.52□□□□□ -1.05
PTPRF-208ENST00000437607 ATP5G1P05496 136 aa8.52□□□□□ -1.05
PTPRF-208ENST00000437607 RAB4AP20338 218 aa8.52□□□□□ -1.05
PTPRF-208ENST00000437607 KIAA1644Q3SXP7 199 aa8.52□□□□□ -1.05
PTPRF-208ENST00000437607 SUMO4Q6EEV6 95 aa8.52□□□□□ -1.05
PTPRF-208ENST00000437607 UFSP1Q6NVU6 142 aa8.52□□□□□ -1.05
PTPRF-208ENST00000437607 SMKR1H3BMG3 65 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 K7EQD1 137 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 P0DMU3 169 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 FAM231AP0DMU4 169 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 FAM231CP0DMU5 169 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 HTN3P15516 51 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 SRIP30626 198 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 RAB5BP61020 215 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 PRELID3AQ96N28 172 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 KRTAP4-5Q9BYR2 181 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 LAMTOR2Q9Y2Q5 125 aa8.51□□□□□ -1.05
PTPRF-208ENST00000437607 PPP1R17O96001 155 aa8.5□□□□□ -1.05
PTPRF-208ENST00000437607 LINC00315P59091 139 aa8.5□□□□□ -1.05
PTPRF-208ENST00000437607 RHOHQ15669 191 aa8.5□□□□□ -1.05
PTPRF-208ENST00000437607 OR10J3Q5JRS4 329 aa8.5□□□□□ -1.05
PTPRF-208ENST00000437607 GATA1P15976 413 aaPredicted RBP8.49□□□□□ -1.05
PTPRF-208ENST00000437607 Q6ZR54 194 aa8.49□□□□□ -1.05
PTPRF-208ENST00000437607 F5H768 121 aa8.48□□□□□ -1.05
PTPRF-208ENST00000437607 PHOX2AO14813 284 aa8.48□□□□□ -1.05
PTPRF-208ENST00000437607 NPYP01303 97 aa8.48□□□□□ -1.05
PTPRF-208ENST00000437607 PRADC1Q9BSG0 188 aa8.48□□□□□ -1.05
PTPRF-208ENST00000437607 ALKBH7Q9BT30 221 aaPredicted RBP8.48□□□□□ -1.05
PTPRF-208ENST00000437607 MAP1LC3AQ9H492 121 aa8.48□□□□□ -1.05
PTPRF-208ENST00000437607 IGLV2-18A0A075B6J9 118 aa8.47□□□□□ -1.05
PTPRF-208ENST00000437607 TRBV10-1A0A0K0K1A3 114 aa8.47□□□□□ -1.05
PTPRF-208ENST00000437607 TRBV6-4A0A1B0GX49 114 aa8.47□□□□□ -1.05
PTPRF-208ENST00000437607 M0QY20 66 aa8.47□□□□□ -1.05
PTPRF-208ENST00000437607 TNFRSF6BO95407 300 aa8.47□□□□□ -1.05
PTPRF-208ENST00000437607 RPL39LQ96EH5 51 aaKnown RBP8.47□□□□□ -1.05
PTPRF-208ENST00000437607 PRO0255Q9UI72 69 aa8.47□□□□□ -1.05
PTPRF-208ENST00000437607 HOXA5P20719 270 aa8.46□□□□□ -1.06
PTPRF-208ENST00000437607 RPL36AP83881 106 aaKnown RBP8.46□□□□□ -1.06
PTPRF-208ENST00000437607 FHL2Q14192 279 aa8.46□□□□□ -1.06
PTPRF-208ENST00000437607 SLC25A29Q8N8R3 303 aa8.46□□□□□ -1.06
PTPRF-208ENST00000437607 NRACQ8N912 160 aa8.46□□□□□ -1.06
PTPRF-208ENST00000437607 RPL36ALQ969Q0 106 aaKnown RBP8.46□□□□□ -1.06
PTPRF-208ENST00000437607 ST20Q9HBF5 79 aa8.46□□□□□ -1.06
PTPRF-208ENST00000437607 NIT2Q9NQR4 276 aa8.46□□□□□ -1.06
PTPRF-208ENST00000437607 TMA7Q9Y2S6 64 aaKnown RBP8.46□□□□□ -1.06
PTPRF-208ENST00000437607 TNFRSF18Q9Y5U5 241 aa8.46□□□□□ -1.06
PTPRF-208ENST00000437607 PAX4O43316 350 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BKO60814 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 GAS8-AS1O95177 125 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BJP06899 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 PMCHP20382 165 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BOP23527 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BBP33778 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BDP58876 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 SUMO2P61956 95 aaKnown RBP8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BCP62807 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST2H2BEQ16778 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 IQCJQ1A5X6 159 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.45□□□□□ -1.06
PTPRF-208ENST00000437607 Q6ZSN1 163 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 NEXN-AS1Q8NBZ9 246 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 C18orf32Q8TCD1 76 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BHQ93079 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 DNAJC30Q96LL9 226 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BNQ99877 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HIST1H2BMQ99879 126 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 C20orf78Q9BR46 151 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 SMIM2Q9BVW6 85 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 HHLA3Q9XRX5 114 aa8.45□□□□□ -1.06
PTPRF-208ENST00000437607 TRBV6-5A0A0K0K1A5 114 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 GAGE12JA6NER3 117 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 CRYBA4P53673 196 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 GAGE1Q13065 139 aa8.44□□□□□ -1.06
PTPRF-208ENST00000437607 GAGE4Q13068 117 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms