RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 MBD3L1Q8WWY6 194 aa7.5□□□□□ -1.21
USP4-204ENST00000416417 TCEAL7Q9BRU2 100 aa7.5□□□□□ -1.21
USP4-204ENST00000416417 DERL1Q9BUN8 251 aa7.5□□□□□ -1.21
USP4-204ENST00000416417 SNAI2O43623 268 aa7.49□□□□□ -1.21
USP4-204ENST00000416417 PFDN1O60925 122 aa7.49□□□□□ -1.21
USP4-204ENST00000416417 PRSS1P07477 247 aa7.49□□□□□ -1.21
USP4-204ENST00000416417 CCL20P78556 96 aa7.49□□□□□ -1.21
USP4-204ENST00000416417 RGS21Q2M5E4 152 aa7.49□□□□□ -1.21
USP4-204ENST00000416417 TMUB2Q71RG4 321 aa7.49□□□□□ -1.21
USP4-204ENST00000416417 TPPP3Q9BW30 176 aa7.49□□□□□ -1.21
USP4-204ENST00000416417 MGPP08493 103 aa7.48□□□□□ -1.21
USP4-204ENST00000416417 RBX1P62877 108 aa7.48□□□□□ -1.21
USP4-204ENST00000416417 LINC00269Q8N2A0 174 aa7.48□□□□□ -1.21
USP4-204ENST00000416417 SSBP4Q9BWG4 385 aaPredicted RBP7.48□□□□□ -1.21
USP4-204ENST00000416417 KIF25-AS1Q9Y6Z4 181 aa7.48□□□□□ -1.21
USP4-204ENST00000416417 FAT3Q8TDW7 4589 aa7.48□□□□□ -1.21
USP4-204ENST00000416417 PANO1I0J062 215 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 S100A9P06702 114 aaKnown RBP7.47□□□□□ -1.21
USP4-204ENST00000416417 CXCL1P09341 107 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 H2AFB1P0C5Y9 115 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 OR5AL1P0C617 328 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 RPL35P42766 123 aaKnown RBP7.47□□□□□ -1.21
USP4-204ENST00000416417 HNRNPA3P51991 378 aaKnown RBP7.47□□□□□ -1.21
USP4-204ENST00000416417 IGLV10-54A0A075B6I4 117 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 BCL2L11O43521 198 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 C14orf177Q52M58 125 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 KRTAP26-1Q6PEX3 210 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 GNG13Q9P2W3 67 aa7.47□□□□□ -1.21
USP4-204ENST00000416417 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.47□□□□□ -1.21
USP4-204ENST00000416417 UMAD1C9J7I0 102 aa7.46□□□□□ -1.22
USP4-204ENST00000416417 SMIM17P0DL12 118 aa7.46□□□□□ -1.22
USP4-204ENST00000416417 RPL37AP61513 92 aaKnown RBP7.46□□□□□ -1.22
USP4-204ENST00000416417 ZNF345Q14585 488 aa7.46□□□□□ -1.22
USP4-204ENST00000416417 HMCN2Q8NDA2 5059 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 KANTRA0A1W2PQU2 76 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 RAB19A4D1S5 217 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 RAB5CP51148 216 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 MIAQ16674 131 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 CENPWQ5EE01 88 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 SUMO4Q6EEV6 95 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.45□□□□□ -1.22
USP4-204ENST00000416417 OR2D3Q8NGH3 330 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 DAZAP1Q96EP5 407 aaKnown RBP7.45□□□□□ -1.22
USP4-204ENST00000416417 AP1S3Q96PC3 154 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 VAX2Q9UIW0 290 aa7.45□□□□□ -1.22
USP4-204ENST00000416417 PKHD1L1Q86WI1 4243 aa7.44□□□□□ -1.22
USP4-204ENST00000416417 TRBV25-1A0A075B6N4 114 aa7.44□□□□□ -1.22
USP4-204ENST00000416417 M0QY20 66 aa7.44□□□□□ -1.22
USP4-204ENST00000416417 NKX2-5P52952 324 aaPredicted RBP7.44□□□□□ -1.22
USP4-204ENST00000416417 FER1L6-AS1Q8NA97 138 aa7.44□□□□□ -1.22
USP4-204ENST00000416417 GFRA4Q9GZZ7 299 aa7.44□□□□□ -1.22
USP4-204ENST00000416417 PRR34Q9NV39 138 aa7.44□□□□□ -1.22
USP4-204ENST00000416417 IGLV4-60A0A075B6I1 120 aa7.43□□□□□ -1.22
USP4-204ENST00000416417 A0A0D9SG52 128 aa7.43□□□□□ -1.22
USP4-204ENST00000416417 IGLC6P0CF74 106 aa7.43□□□□□ -1.22
USP4-204ENST00000416417 C9orf163Q8N9P6 203 aa7.43□□□□□ -1.22
USP4-204ENST00000416417 C20orf203Q8NBC4 194 aa7.43□□□□□ -1.22
USP4-204ENST00000416417 IGHV1-24A0A0C4DH33 117 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 HMSDA8MTL9 139 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 REG3AQ06141 175 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 IQCJQ1A5X6 159 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 C11orf52Q96A22 123 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 C19orf71A6NCJ1 209 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 OXTP01178 125 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 PKIAP61925 76 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 TMEM97Q5BJF2 176 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 SDIM1Q6ZPB5 146 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 MANBALQ9NQG1 85 aa7.42□□□□□ -1.22
USP4-204ENST00000416417 hDV102S1A0JD36 115 aa7.41□□□□□ -1.22
USP4-204ENST00000416417 DGAT2L7PQ6IED9 249 aa7.41□□□□□ -1.22
USP4-204ENST00000416417 LYZL1Q6UWQ5 148 aa7.41□□□□□ -1.22
USP4-204ENST00000416417 TRBV20OR9-2A0A075B6H5 130 aa7.4□□□□□ -1.22
USP4-204ENST00000416417 SLPIP03973 132 aa7.4□□□□□ -1.22
USP4-204ENST00000416417 CHTF8P0CG12 524 aa7.4□□□□□ -1.22
USP4-204ENST00000416417 GNG4P50150 75 aa7.4□□□□□ -1.22
USP4-204ENST00000416417 SERTAD4-AS1Q5TG53 156 aa7.4□□□□□ -1.22
USP4-204ENST00000416417 RASL11AQ6T310 242 aa7.4□□□□□ -1.22
USP4-204ENST00000416417 TMEM243Q9BU79 118 aa7.4□□□□□ -1.22
USP4-204ENST00000416417 IGKV3OR2-268A0A0C4DH90 116 aa7.39□□□□□ -1.23
USP4-204ENST00000416417 P01737 135 aa7.39□□□□□ -1.23
USP4-204ENST00000416417 NTF3P20783 257 aa7.39□□□□□ -1.23
USP4-204ENST00000416417 RPS20P60866 119 aaKnown RBP7.39□□□□□ -1.23
USP4-204ENST00000416417 CACNG7P62955 275 aa7.39□□□□□ -1.23
USP4-204ENST00000416417 UBR4Q5T4S7 5183 aa7.39□□□□□ -1.23
USP4-204ENST00000416417 TRAV26-2A0A0B4J265 109 aa7.38□□□□□ -1.23
USP4-204ENST00000416417 H7C1H1 209 aa7.38□□□□□ -1.23
USP4-204ENST00000416417 IFNA1P01562 189 aa7.38□□□□□ -1.23
USP4-204ENST00000416417 EIF5AP63241 154 aaKnown RBP7.38□□□□□ -1.23
USP4-204ENST00000416417 DPH3Q96FX2 82 aa7.38□□□□□ -1.23
USP4-204ENST00000416417 FAM210AQ96ND0 272 aa7.38□□□□□ -1.23
USP4-204ENST00000416417 MED9Q9NWA0 146 aa7.38□□□□□ -1.23
USP4-204ENST00000416417 TRAV1-1A0A0B4J248 108 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 CLRN3Q8NCR9 226 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 NUDT10Q8NFP7 164 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 NUDT11Q96G61 164 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 DPH3P1Q9H4G8 78 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 NIT2Q9NQR4 276 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 PLA2G2DQ9UNK4 145 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 GAGE12HA6NDE8 117 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 UBE2L6O14933 153 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms