RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 ZMAT4Q9H898 229 aa18.27■□□□□ 0.52
SHOX2-201ENST00000389589 GIG44P09565 113 aaPredicted RBP18.27■□□□□ 0.51
SHOX2-201ENST00000389589 CFAP126Q5VTH2 177 aa18.27■□□□□ 0.51
SHOX2-201ENST00000389589 ZFP2Q6ZN57 461 aa18.27■□□□□ 0.51
SHOX2-201ENST00000389589 IL17DQ8TAD2 202 aa18.27■□□□□ 0.51
SHOX2-201ENST00000389589 NIPBLQ6KC79 2804 aaeCLIP18.26■□□□□ 0.51
SHOX2-201ENST00000389589 RPL35AP18077 110 aaKnown RBP18.26■□□□□ 0.51
SHOX2-201ENST00000389589 RNASE8Q8TDE3 154 aaKnown RBP18.26■□□□□ 0.51
SHOX2-201ENST00000389589 TMEM263Q8WUH6 116 aaKnown RBP18.26■□□□□ 0.51
SHOX2-201ENST00000389589 SNHG12Q9BXW3 62 aa18.26■□□□□ 0.51
SHOX2-201ENST00000389589 CYSLTR1Q9Y271 337 aa18.26■□□□□ 0.51
SHOX2-201ENST00000389589 MRPL16Q9NX20 251 aaKnown RBP18.25■□□□□ 0.51
SHOX2-201ENST00000389589 TRAV12-1A0A0B4J245 112 aa18.24■□□□□ 0.51
SHOX2-201ENST00000389589 SLC25A34Q6PIV7 304 aa18.24■□□□□ 0.51
SHOX2-201ENST00000389589 ERASQ7Z444 233 aa18.24■□□□□ 0.51
SHOX2-201ENST00000389589 MRPS16Q9Y3D3 137 aaKnown RBP18.24■□□□□ 0.51
SHOX2-201ENST00000389589 JMJD1CQ15652 2540 aa18.24■□□□□ 0.51
SHOX2-201ENST00000389589 RS1O15537 224 aa18.24■□□□□ 0.51
SHOX2-201ENST00000389589 C2orf88Q9BSF0 95 aa18.24■□□□□ 0.51
SHOX2-201ENST00000389589 A0A087WX48 190 aa18.23■□□□□ 0.51
SHOX2-201ENST00000389589 EREGO14944 169 aa18.23■□□□□ 0.51
SHOX2-201ENST00000389589 RIPPLY3P57055 190 aa18.23■□□□□ 0.51
SHOX2-201ENST00000389589 IGHV3-73A0A0B4J1V6 119 aa18.22■□□□□ 0.51
SHOX2-201ENST00000389589 DPM2O94777 84 aa18.22■□□□□ 0.51
SHOX2-201ENST00000389589 IGKCP01834 107 aa18.22■□□□□ 0.51
SHOX2-201ENST00000389589 RHOHQ15669 191 aa18.22■□□□□ 0.51
SHOX2-201ENST00000389589 GTSCR1Q86UQ5 136 aa18.22■□□□□ 0.51
SHOX2-201ENST00000389589 I3L3M4 83 aa18.21■□□□□ 0.51
SHOX2-201ENST00000389589 COX8AP10176 69 aa18.21■□□□□ 0.51
SHOX2-201ENST00000389589 F8P00451 2351 aa18.21■□□□□ 0.5
SHOX2-201ENST00000389589 ANKRD39Q53RE8 183 aa18.2■□□□□ 0.5
SHOX2-201ENST00000389589 CSNK1G2-AS1Q8NCQ2 148 aa18.2■□□□□ 0.5
SHOX2-201ENST00000389589 TP53TG1Q9Y2A0 90 aa18.2■□□□□ 0.5
SHOX2-201ENST00000389589 STPG4Q8N801 248 aa18.19■□□□□ 0.5
SHOX2-201ENST00000389589 C16orf74Q96GX8 76 aa18.19■□□□□ 0.5
SHOX2-201ENST00000389589 IGHV3-53P01767 116 aa18.19■□□□□ 0.5
SHOX2-201ENST00000389589 NEXN-AS1Q8NBZ9 246 aa18.19■□□□□ 0.5
SHOX2-201ENST00000389589 MRPL35Q9NZE8 188 aaKnown RBP18.19■□□□□ 0.5
SHOX2-201ENST00000389589 TNFRSF18Q9Y5U5 241 aa18.19■□□□□ 0.5
SHOX2-201ENST00000389589 BAHCC1Q9P281 2608 aa18.19■□□□□ 0.5
SHOX2-201ENST00000389589 FLNBO75369 2602 aaKnown RBP18.18■□□□□ 0.5
SHOX2-201ENST00000389589 TRGV1A0A0A0MS02 117 aa18.18■□□□□ 0.5
SHOX2-201ENST00000389589 PLNP26678 52 aa18.18■□□□□ 0.5
SHOX2-201ENST00000389589 TMEM141Q96I45 108 aa18.18■□□□□ 0.5
SHOX2-201ENST00000389589 TSHBP01222 138 aa18.17■□□□□ 0.5
SHOX2-201ENST00000389589 DAZ2Q13117 558 aaKnown RBP18.17■□□□□ 0.5
SHOX2-201ENST00000389589 BAALCQ8WXS3 180 aa18.17■□□□□ 0.5
SHOX2-201ENST00000389589 DNAJC30Q96LL9 226 aa18.17■□□□□ 0.5
SHOX2-201ENST00000389589 HHLA3Q9XRX5 114 aa18.17■□□□□ 0.5
SHOX2-201ENST00000389589 F8VRH5 84 aa18.16■□□□□ 0.5
SHOX2-201ENST00000389589 TIMM17AQ99595 171 aa18.16■□□□□ 0.5
SHOX2-201ENST00000389589 IGIPA6NJ69 53 aa18.16■□□□□ 0.5
SHOX2-201ENST00000389589 OR4C5Q8NGB2 326 aa18.16■□□□□ 0.5
SHOX2-201ENST00000389589 Q6ZSN1 163 aa18.15■□□□□ 0.5
SHOX2-201ENST00000389589 CHTOPQ9Y3Y2 248 aaKnown RBP18.15■□□□□ 0.5
SHOX2-201ENST00000389589 P0DMU3 169 aa18.14■□□□□ 0.5
SHOX2-201ENST00000389589 FAM231AP0DMU4 169 aa18.14■□□□□ 0.5
SHOX2-201ENST00000389589 FAM231CP0DMU5 169 aa18.14■□□□□ 0.5
SHOX2-201ENST00000389589 RRN3P1Q2M238 152 aa18.14■□□□□ 0.49
SHOX2-201ENST00000389589 SPATA3Q8NHX4 192 aa18.14■□□□□ 0.49
SHOX2-201ENST00000389589 TEP1Q99973 2627 aaKnown RBP18.14■□□□□ 0.49
SHOX2-201ENST00000389589 RPL39P62891 51 aaKnown RBP18.13■□□□□ 0.49
SHOX2-201ENST00000389589 DEFB104AQ8WTQ1 72 aa18.13■□□□□ 0.49
SHOX2-201ENST00000389589 Q6ZTI0 123 aa18.12■□□□□ 0.49
SHOX2-201ENST00000389589 TRAV4A0A0B4J268 109 aa18.11■□□□□ 0.49
SHOX2-201ENST00000389589 C20orf203Q8NBC4 194 aa18.11■□□□□ 0.49
SHOX2-201ENST00000389589 NOP10Q9NPE3 64 aaKnown RBP18.11■□□□□ 0.49
SHOX2-201ENST00000389589 TENM1Q9UKZ4 2725 aa18.11■□□□□ 0.49
SHOX2-201ENST00000389589 PLAC8L1A1L4L8 177 aa18.11■□□□□ 0.49
SHOX2-201ENST00000389589 PRSS29PA6NIE9 313 aa18.11■□□□□ 0.49
SHOX2-201ENST00000389589 ZC2HC1BQ5TFG8 222 aa18.11■□□□□ 0.49
SHOX2-201ENST00000389589 WFDC9Q8NEX5 89 aa18.11■□□□□ 0.49
SHOX2-201ENST00000389589 NOTCH3Q9UM47 2321 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 DLEU1O43261 78 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 FGF6P10767 208 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 BOD1L2Q8IYS8 172 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 TP73-AS1Q9UF72 201 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 BATFQ16520 125 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 OVOL2Q9BRP0 275 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 ATRQ13535 2644 aa18.1■□□□□ 0.49
SHOX2-201ENST00000389589 NMUP48645 174 aa18.08■□□□□ 0.49
SHOX2-201ENST00000389589 PMVKQ15126 192 aa18.08■□□□□ 0.49
SHOX2-201ENST00000389589 CIDEAO60543 219 aa18.07■□□□□ 0.48
SHOX2-201ENST00000389589 ZNF479Q96JC4 524 aa18.07■□□□□ 0.48
SHOX2-201ENST00000389589 TCTAP57738 103 aa18.07■□□□□ 0.48
SHOX2-201ENST00000389589 VWFP04275 2813 aa18.06■□□□□ 0.48
SHOX2-201ENST00000389589 TRBV10-1A0A0K0K1A3 114 aa18.05■□□□□ 0.48
SHOX2-201ENST00000389589 PAPPA-AS1Q5QFB9 102 aa18.05■□□□□ 0.48
SHOX2-201ENST00000389589 Q9UF83 564 aa18.05■□□□□ 0.48
SHOX2-201ENST00000389589 A0A1B0GV90 55 aa18.05■□□□□ 0.48
SHOX2-201ENST00000389589 SIVA1O15304 175 aa18.05■□□□□ 0.48
SHOX2-201ENST00000389589 HINT1P49773 126 aaPredicted RBP18.05■□□□□ 0.48
SHOX2-201ENST00000389589 COL5A1-AS1Q5SY13 56 aa18.05■□□□□ 0.48
SHOX2-201ENST00000389589 CST9LQ9H4G1 147 aa18.05■□□□□ 0.48
SHOX2-201ENST00000389589 WIPF1O43516 503 aa18.04■□□□□ 0.48
SHOX2-201ENST00000389589 C2orf91Q6ZV80 131 aa18.04■□□□□ 0.48
SHOX2-201ENST00000389589 K7EQD1 137 aa18.03■□□□□ 0.48
SHOX2-201ENST00000389589 C12orf54Q6X4T0 127 aa18.03■□□□□ 0.48
SHOX2-201ENST00000389589 PCP2Q8IVA1 136 aa18.03■□□□□ 0.48
SHOX2-201ENST00000389589 PYGO1Q9Y3Y4 419 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms